Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc138.11 Carica papaya HOM05D000095 ORTHO05D043552 4.5e-35 151.0 91 100.0
Duzib248G1059 Durio zibethinus HOM05D000095 ORTHO05D000330 2.5e-30 135.2 90 76.7
Thecc.02G154100 Theobroma cacao HOM05D000095 ORTHO05D000330 7.4e-30 133.7 91 74.7
COL.COLO4_33116 Corchorus olitorius HOM05D000095 ORTHO05D000330 2.1e-29 132.1 90 74.4
Atru.chr11.1264 Acer truncatum HOM05D000095 ORTHO05D000330 2.8e-29 131.7 90 77.8
ClCG01G008050 Citrullus lanatus HOM05D000095 ORTHO05D000330 1.8e-28 129.0 70 87.1
Glyma.07G175500 Glycine max HOM05D000095 ORTHO05D000330 3.1e-28 128.3 71 90.1
MBI06_g27481_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 3.1e-28 128.3 69 88.4
Potri.005G087700 Populus trichocarpa HOM05D000095 ORTHO05D000330 3.1e-28 128.3 90 72.2
EL10Ac1g00472 Beta vulgaris HOM05D000095 ORTHO05D000330 5.3e-28 127.5 67 89.6
Duzib132G0494 Durio zibethinus HOM05D000095 ORTHO05D000330 5.3e-28 127.5 90 74.4
Manes.11G001300 Manihot esculenta HOM05D000095 ORTHO05D000330 6.9e-28 127.1 89 69.7
Sabra05G0072500 Salix brachista HOM05D000095 ORTHO05D000330 6.9e-28 127.1 89 73.0
MELO3C005072.2 Cucumis melo HOM05D000095 ORTHO05D000330 9.0e-28 126.7 70 87.1
CsaV3_5G020780 Cucumis sativus L. HOM05D000095 ORTHO05D000330 9.0e-28 126.7 70 87.1
MD13G1002700 Malus domestica HOM05D000095 ORTHO05D000330 9.0e-28 126.7 70 90.0
Potri.007G076200 Populus trichocarpa HOM05D000095 ORTHO05D000330 2.6e-27 125.2 90 72.2
Ciclev10032259m.g Citrus clementina HOM05D000095 ORTHO05D000330 4.5e-27 124.4 70 85.7
TWI53G1991 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 4.5e-27 124.4 95 71.6
Lj4g0027240 Lotus japonicus HOM05D000095 ORTHO05D000330 7.6e-27 123.6 70 84.3
Prupe.1G349700 Prunus persica HOM05D000095 ORTHO05D000330 7.6e-27 123.6 71 88.7
QL01p000848 Quercus lobata HOM05D000095 ORTHO05D000330 7.6e-27 123.6 88 87.5
Sed0027147 Sechium edule HOM05D000095 ORTHO05D000330 7.6e-27 123.6 66 89.4
AUR62032938 Chenopodium quinoa HOM05D000095 ORTHO05D000330 1.0e-26 123.2 69 87.0
AUR62017737 Chenopodium quinoa HOM05D000095 ORTHO05D000330 2.2e-26 122.1 69 87.0
VMungo0251G3667 Vigna mungo HOM05D000095 ORTHO05D000330 2.9e-26 121.7 70 82.9
TAR371G0274 Trochodendron aralioides HOM05D000095 ORTHO05D000330 3.8e-26 121.3 69 87.0
Gohir.D13G059700 Gossypium hirsutum HOM05D000095 ORTHO05D000330 4.9e-26 120.9 91 79.1
Gorai.013G067600 Gossypium raimondii HOM05D000095 ORTHO05D000330 4.9e-26 120.9 91 71.4
TAR622G0949 Trochodendron aralioides HOM05D000095 ORTHO05D000330 4.9e-26 120.9 89 69.7
Ca_26281_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000330 1.1e-25 119.8 71 83.1
CANSAT78G1782 Cannabis sativa HOM05D000095 ORTHO05D000330 1.4e-25 119.4 69 87.0
CSS0032163 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000330 1.9e-25 119.0 69 89.9
Cc11_g00490 Coffea canephora HOM05D000095 ORTHO05D000330 1.9e-25 119.0 90 67.8
Glyma.20G011700 Glycine max HOM05D000095 ORTHO05D000330 1.9e-25 119.0 71 84.5
Oeu006331.1 Olea europaea HOM05D000095 ORTHO05D000330 1.9e-25 119.0 90 67.8
Hma1.2p1_0044F.1_g026390 Hydrangea macrophylla HOM05D000095 ORTHO05D000330 3.2e-25 118.2 91 65.9
Nn3g18567 Nelumbo nucifera HOM05D000095 ORTHO05D000330 3.2e-25 118.2 68 83.8
CiPaw.15G001700 Carya illinoinensis HOM05D000095 ORTHO05D000330 4.2e-25 117.9 89 66.3
Gohir.A13G062200 Gossypium hirsutum HOM05D000095 ORTHO05D000330 4.2e-25 117.9 91 70.3
Hma1.2p1_0413F.1_g147410 Hydrangea macrophylla HOM05D000095 ORTHO05D000330 4.2e-25 117.9 90 65.6
Dinv17651 Davidia involucrata HOM05D000095 ORTHO05D000330 5.5e-25 117.5 88 71.6
Manes.04G162400 Manihot esculenta HOM05D000095 ORTHO05D000330 5.5e-25 117.5 93 66.7
Cfa018657 Carpinus fangiana HOM05D000095 ORTHO05D000330 7.1e-25 117.1 68 83.8
Actinidia04093 Actinidia chinensis HOM05D000095 ORTHO05D000330 9.3e-25 116.7 68 85.3
Actinidia04356 Actinidia chinensis HOM05D000095 ORTHO05D000330 9.3e-25 116.7 68 86.8
Haze_17411 Corylus avellana HOM05D000095 ORTHO05D000330 1.2e-24 116.3 68 83.8
TPR.G39769 Trifolium pratense HOM05D000095 ORTHO05D000330 1.6e-24 115.9 65 83.1
VMungo1215G1233 Vigna mungo HOM05D000095 ORTHO05D000330 2.1e-24 115.5 70 80.0
CiPaw.16G002000 Carya illinoinensis HOM05D000095 ORTHO05D000330 2.7e-24 115.2 69 84.1
MD00G1126800 Malus domestica HOM05D000095 ORTHO05D000330 2.7e-24 115.2 71 87.3
Psat6g131160 Pisum sativum HOM05D000095 ORTHO05D000330 2.7e-24 115.2 91 65.9
Medtr1g033620 Medicago truncatula HOM05D000095 ORTHO05D000330 3.5e-24 114.8 91 68.1
FAN07G2831 Fragaria x ananassa HOM05D000095 ORTHO05D000330 6.0e-24 114.0 72 84.7
FAN17G2941 Fragaria x ananassa HOM05D000095 ORTHO05D000330 6.0e-24 114.0 72 84.7
FvH4_4g37210 Fragaria vesca HOM05D000095 ORTHO05D000330 7.9e-24 113.6 72 84.7
FAN12G1083 Fragaria x ananassa HOM05D000095 ORTHO05D000330 7.9e-24 113.6 72 84.7
Nitab4.5_0000146g0010 Nicotiana tabacum HOM05D000095 ORTHO05D000330 7.9e-24 113.6 65 83.1
Phvul.003G013600 Phaseolus vulgaris HOM05D000095 ORTHO05D000330 7.9e-24 113.6 71 80.3
Gohir.D04G149100 Gossypium hirsutum HOM05D000095 ORTHO05D000330 1.0e-23 113.2 90 66.7
CAN.G912.3 Capsicum annuum HOM05D000095 ORTHO05D000330 1.3e-23 112.8 69 78.3
AUR62037114 Chenopodium quinoa HOM05D000095 ORTHO05D043552 1.3e-23 112.8 68 79.4
CARHR204470 Cardamine hirsuta HOM05D000095 ORTHO05D000330 1.8e-23 112.5 71 83.1
Glyma.18G134200 Glycine max HOM05D000095 ORTHO05D000330 2.3e-23 112.1 70 81.4
Gorai.012G135600 Gossypium raimondii HOM05D000095 ORTHO05D000330 2.3e-23 112.1 90 65.6
MSTRG.13673 Avicennia marina HOM05D000095 ORTHO05D000330 3.0e-23 111.7 88 63.6
Phvul.003G054100 Phaseolus vulgaris HOM05D000095 ORTHO05D000330 3.0e-23 111.7 70 75.7
THA.LOC104800405 Tarenaya hassleriana HOM05D000095 ORTHO05D000330 3.9e-23 111.3 69 81.2
MSTRG.2072 Avicennia marina HOM05D000095 ORTHO05D000330 5.1e-23 110.9 70 77.1
RcHm_v2.0_Chr4g0446981 Rosa chinensis HOM05D000095 ORTHO05D000330 5.1e-23 110.9 72 83.3
AL6G19220 Arabidopsis lyrata HOM05D000095 ORTHO05D000330 1.5e-22 109.4 72 79.2
A10p28210 Brassica napus HOM05D000095 ORTHO05D000330 2.5e-22 108.6 72 79.2
C09p68420 Brassica napus HOM05D000095 ORTHO05D000330 2.5e-22 108.6 72 79.2
Glyma.08G290100 Glycine max HOM05D000095 ORTHO05D000330 3.3e-22 108.2 71 77.5
Thhalv10014203m.g Eutrema salsugineum HOM05D000095 ORTHO05D000330 4.3e-22 107.8 71 78.9
Sp6g34380 Schrenkiella parvula HOM05D000095 ORTHO05D000330 5.7e-22 107.5 71 78.9
ATR0618G141 Amborella trichopoda HOM05D000095 ORTHO05D000330 7.4e-22 107.1 63 82.5
Ah.01g012110 Amaranthus hybridus HOM05D000095 ORTHO05D000330 9.7e-22 106.7 68 77.9
Eucgr.G02591 Eucalyptus grandis HOM05D000095 ORTHO05D000330 9.7e-22 106.7 68 77.9
Lj2g0013619 Lotus japonicus HOM05D000095 ORTHO05D000330 1.3e-21 106.3 72 79.2
Gohir.D02G190200 Gossypium hirsutum HOM05D000095 ORTHO05D000330 1.6e-21 105.9 88 63.6
Gohir.D12G136200 Gossypium hirsutum HOM05D000095 ORTHO05D000330 1.6e-21 105.9 89 64.0
BolC9t59589H Brassica oleracea HOM05D000095 ORTHO05D000330 2.2e-21 105.5 72 77.8
Cpa.g.sc138.5 Carica papaya HOM05D000095 ORTHO05D000330 2.2e-21 105.5 80 70.0
Gohir.A03G167100 Gossypium hirsutum HOM05D000095 ORTHO05D000330 2.2e-21 105.5 88 62.5
Gorai.005G212900 Gossypium raimondii HOM05D000095 ORTHO05D000330 2.2e-21 105.5 88 62.5
Gorai.008G147400 Gossypium raimondii HOM05D000095 ORTHO05D000330 2.2e-21 105.5 90 63.3
Hma1.2p1_0513F.1_g169490 Hydrangea macrophylla HOM05D000095 ORTHO05D000330 2.8e-21 105.1 90 63.3
vmacro16002 Vaccinium macrocarpon HOM05D000095 ORTHO05D000330 3.7e-21 104.8 68 80.9
Carub.0006s0747 Capsella rubella HOM05D000095 ORTHO05D000330 6.3e-21 104.0 72 73.6
Gohir.A04G109440 Gossypium hirsutum HOM05D000095 ORTHO05D000330 6.3e-21 104.0 90 64.4
Oeu062427.1 Olea europaea HOM05D000095 ORTHO05D000330 6.3e-21 104.0 91 62.6
arahy.Tifrunner.gnm1.ann1.YX3ICE Arachis hypogaea HOM05D000095 ORTHO05D000330 1.4e-20 102.8 72 79.2
BraA10t44870Z Brassica rapa HOM05D000095 ORTHO05D000330 1.4e-20 102.8 71 77.5
RhsimUnG0103000 Rhododendron simsii HOM05D000095 ORTHO05D000330 2.4e-20 102.1 90 63.3
Lj6A707G44 Lonicera japonica HOM05D000095 ORTHO05D000330 3.1e-20 101.7 68 77.9
Peaxi162Scf00334g00006 Petunia axillaris HOM05D000095 ORTHO05D000330 3.1e-20 101.7 70 71.4
SalBow2G0485 Salvia bowleyana HOM05D000095 ORTHO05D000330 6.9e-20 100.5 88 62.5
BcaB08g37250 Brassica carinata HOM05D000095 ORTHO05D000330 9.0e-20 100.1 71 76.1
Eucgr.J00349 Eucalyptus grandis HOM05D000095 ORTHO05D000330 9.0e-20 100.1 70 72.9
Os04g0676700 Oryza sativa ssp. japonica HOM05D000095 ORTHO05D000330 9.0e-20 100.1 70 72.9
Lalb_Chr17g0338351 Lupinus albus HOM05D000095 ORTHO05D000330 1.2e-19 99.8 70 72.9
Oeu026898.1 Olea europaea HOM05D000095 ORTHO05D000330 1.2e-19 99.8 90 61.1
Oeu036768.1 Olea europaea HOM05D000095 ORTHO05D000330 2.6e-19 98.6 74 71.6
Gohir.A12G132800 Gossypium hirsutum HOM05D000095 ORTHO05D000330 1.0e-18 96.7 90 60.0
THA.LOC104819364 Tarenaya hassleriana HOM05D000095 ORTHO05D000330 1.3e-18 96.3 58 82.8
Lalb_Chr10g0095501 Lupinus albus HOM05D000095 ORTHO05D000330 1.7e-18 95.9 71 73.2
Nitab4.5_0001932g0010 Nicotiana tabacum HOM05D000095 ORTHO05D000330 2.9e-18 95.1 65 75.4
arahy.Tifrunner.gnm1.ann1.EXG4FA Arachis hypogaea HOM05D000095 ORTHO05D000330 5.0e-18 94.4 71 74.6
BcaB01g05589 Brassica carinata HOM05D000095 ORTHO05D000330 8.5e-18 93.6 71 71.8
PSO063G4646 Papaver somniferum HOM05D000095 ORTHO05D000330 1.9e-17 92.4 82 58.5
PSO782G5593 Papaver somniferum HOM05D000095 ORTHO05D000330 1.9e-17 92.4 82 58.5
Aqoxy3G04308 Aquilegia oxysepala HOM05D000095 ORTHO05D000330 2.5e-17 92.0 87 57.5
Lj6C712G7 Lonicera japonica HOM05D000095 ORTHO05D000330 2.5e-17 92.0 68 73.5
Lalb_Chr04g0258781 Lupinus albus HOM05D000095 ORTHO05D000330 1.6e-16 89.4 71 67.6
SalBow2G1529 Salvia bowleyana HOM05D000095 ORTHO05D000330 2.1e-16 89.0 69 69.6
BolC3t12970H Brassica oleracea HOM05D000001 ORTHO05D000003 4.6e-16 87.8 69 68.1
THA.LOC104818399 Tarenaya hassleriana HOM05D000095 ORTHO05D000330 4.6e-16 87.8 72 66.7
CDE04G1043 Ceratophyllum demersum HOM05D000095 ORTHO05D000330 6.1e-16 87.4 70 65.7
CDE04G2793 Ceratophyllum demersum HOM05D000095 ORTHO05D000330 6.1e-16 87.4 72 65.3
TAR629G1618 Trochodendron aralioides HOM05D000095 ORTHO05D000330 6.1e-16 87.4 67 70.1
Aa31LG3G18020 Aethionema arabicum HOM05D000095 ORTHO05D000330 3.0e-15 85.1 67 71.6
CDE02G2544 Ceratophyllum demersum HOM05D000095 ORTHO05D000330 3.9e-15 84.7 70 64.3
Lalb_Chr16g0392471 Lupinus albus HOM05D000095 ORTHO05D000330 3.9e-15 84.7 66 75.8
Oeu013192.1 Olea europaea HOM05D000095 ORTHO05D000330 6.7e-15 84.0 74 64.9
TWI74G1277 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 8.8e-15 83.6 55 78.2
arahy.Tifrunner.gnm1.ann1.C8ILII Arachis hypogaea HOM05D000095 ORTHO05D000330 1.1e-14 83.2 71 70.4
CDE07G2028 Ceratophyllum demersum HOM05D000095 ORTHO05D000330 2.5e-14 82.0 69 59.4
DCAR_026879 Daucus carota HOM05D000095 ORTHO05D000330 2.5e-14 82.0 69 69.6
DCAR_023482 Daucus carota HOM05D000095 ORTHO05D000330 3.3e-14 81.6 69 65.2
CDE04G1216 Ceratophyllum demersum HOM05D000095 ORTHO05D000330 4.3e-14 81.3 69 59.4
Zm00001eb066260 Zea mays HOM05D000095 ORTHO05D000330 4.3e-14 81.3 70 61.4
C03p04390 Brassica napus HOM05D000001 ORTHO05D000003 5.7e-14 80.9 72 65.3
A03p03880 Brassica napus HOM05D000001 ORTHO05D000003 7.4e-14 80.5 66 65.2
DCAR_002608 Daucus carota HOM05D000095 ORTHO05D000330 1.3e-13 79.7 98 51.0
Lalb_Chr09g0335121 Lupinus albus HOM05D000095 ORTHO05D000330 1.7e-13 79.3 73 67.1
Cpa.g.c29388 Carica papaya HOM05D000095 ORTHO05D120135 1.1e-12 76.6 108 60.2
HanXRQChr17g0541071 Helianthus annuus HOM05D000095 ORTHO05D000330 1.4e-12 76.3 55 72.7
Medtr8g063600 Medicago truncatula HOM05D000095 ORTHO05D000330 5.3e-12 74.3 62 64.5
Sed0006231 Sechium edule HOM05D000095 ORTHO05D000330 2.0e-11 72.4 59 62.7
unitig_22.g5619 Utricularia gibba HOM05D000095 ORTHO05D000330 2.0e-11 72.4 69 63.8
Migut.E00676 Erythranthe guttata HOM05D000095 ORTHO05D000330 1.7e-10 69.3 69 58.0
Dinv28274 Davidia involucrata HOM05D000095 ORTHO05D000330 3.8e-10 68.2 70 52.9
unitig_8.g3593 Utricularia gibba HOM05D000095 ORTHO05D000330 5.0e-10 67.8 69 59.4
Duzib052G1214 Durio zibethinus HOM05D000095 ORTHO05D000330 1.1e-09 66.6 35 88.6
AT5G08520 Arabidopsis thaliana HOM05D000095 ORTHO05D000330 1.4e-09 66.2 47 76.6
arahy.Tifrunner.gnm1.ann1.ARS1HB Arachis hypogaea HOM05D000095 ORTHO05D000330 1.9e-09 65.9 72 54.2
CsaV3_5G029080 Cucumis sativus L. HOM05D000095 ORTHO05D000330 3.2e-09 65.1 61 55.7
PGR102G3307 Punica granatum HOM05D000095 ORTHO05D000330 3.2e-09 65.1 69 58.0
Lj3A846T61 Lonicera japonica HOM05D000095 ORTHO05D000330 1.2e-08 63.2 67 56.7
Sc10g0006690 Simmondsia chinensis HOM05D000095 ORTHO05D000330 2.1e-08 62.4 40 85.0
SGA_v2.0_scaffold65G22172 Striga asiatica HOM05D000095 ORTHO05D000330 2.7e-08 62.0 61 59.0
HPP92_002423 Vanilla planifolia HOM05D000095 ORTHO05D000330 2.7e-08 62.0 71 54.9
MELO3C011759.2 Cucumis melo HOM05D000095 ORTHO05D000330 6.1e-08 60.8 61 52.5
unitig_699.g19637 Utricularia gibba HOM05D000095 ORTHO05D000330 3.0e-07 58.5 69 55.1
ClCG02G014200 Citrullus lanatus HOM05D000095 ORTHO05D000330 3.9e-07 58.2 42 66.7
Ca_22762_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000330 2.0e-06 55.8 90 40.0
Psat4g127200 Pisum sativum HOM05D000095 ORTHO05D000330 2.0e-06 55.8 62 54.8
C02p03640 Brassica napus HOM05D000095 ORTHO05D000330 2.6e-06 55.5 71 52.1
ECA234G0467 Erigeron canadensis HOM05D000095 ORTHO05D000330 9.7e-06 53.5 56 57.1


User provided reference genes

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