Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 1.3e-89 334.7 172 100.0
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 1.3e-57 228.4 144 72.9
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 2.2e-57 227.6 144 72.9
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 2.9e-57 227.3 144 72.9
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 3.8e-57 226.9 145 73.1
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 5.0e-57 226.5 144 72.2
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 6.5e-57 226.1 144 72.2
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 8.5e-57 225.7 144 72.2
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 1.1e-56 225.3 131 77.9
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 1.9e-56 224.6 131 77.1
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 2.5e-56 224.2 144 72.9
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 3.2e-56 223.8 144 72.2
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 4.2e-56 223.4 144 70.8
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 4.2e-56 223.4 131 78.6
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 7.2e-56 222.6 144 71.5
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 7.2e-56 222.6 131 77.1
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 7.2e-56 222.6 131 75.6
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 9.4e-56 222.2 130 79.2
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.6e-55 221.5 131 76.3
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 2.1e-55 221.1 131 77.9
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 2.7e-55 220.7 131 74.8
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 6.1e-55 219.5 131 77.9
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 6.1e-55 219.5 131 77.1
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 6.1e-55 219.5 130 79.2
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 6.1e-55 219.5 131 76.3
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 6.1e-55 219.5 131 76.3
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 1.0e-54 218.8 144 70.8
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 1.0e-54 218.8 144 69.4
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 1.0e-54 218.8 129 79.1
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 1.8e-54 218.0 131 76.3
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 2.3e-54 217.6 130 76.9
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 5.2e-54 216.5 131 74.8
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 6.7e-54 216.1 131 72.5
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 8.8e-54 215.7 145 69.0
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 2.0e-53 214.5 129 73.6
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 4.4e-53 213.4 129 72.9
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 5.7e-53 213.0 131 77.1
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 9.7e-53 212.2 131 72.5
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.3e-52 211.8 131 75.6
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 1.7e-52 211.5 130 76.9
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 2.2e-52 211.1 131 75.6
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 2.8e-52 210.7 142 69.7
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 4.8e-52 209.9 131 74.0
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 6.3e-52 209.5 132 69.7
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 6.3e-52 209.5 131 74.8
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 6.3e-52 209.5 131 74.8
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.4e-51 208.4 130 73.1
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 1.8e-51 208.0 131 74.8
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 3.1e-51 207.2 130 73.1
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 3.1e-51 207.2 129 74.4
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 4.1e-51 206.8 129 70.5
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 4.1e-51 206.8 129 72.9
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 5.3e-51 206.5 132 69.7
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 1.6e-50 204.9 131 73.3
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 2.6e-50 204.1 129 72.9
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 5.9e-50 203.0 130 73.8
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 1.7e-49 201.4 131 67.2
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.7e-49 201.4 131 66.4
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.7e-49 201.4 131 66.4
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.7e-49 201.4 129 72.1
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 1.7e-49 201.4 144 66.7
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 2.9e-49 200.7 129 71.3
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 8.5e-49 199.1 129 69.8
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 1.1e-48 198.7 129 69.8
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 1.9e-48 198.0 159 61.6
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 3.2e-48 197.2 144 68.1
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 3.2e-48 197.2 129 72.1
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 9.4e-48 195.7 130 65.4
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 9.4e-48 195.7 129 69.0
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 1.6e-47 194.9 130 67.7
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 1.6e-47 194.9 129 70.5
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 2.7e-47 194.1 136 65.4
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 3.6e-47 193.7 131 65.6
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 4.7e-47 193.4 144 62.5
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 6.1e-47 193.0 129 69.0
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 1.4e-46 191.8 136 65.4
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 1.8e-46 191.4 132 62.9
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 2.3e-46 191.0 129 67.4
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 3.0e-46 190.7 129 68.2
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 2.0e-45 188.0 131 66.4
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 2.6e-45 187.6 130 65.4
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 3.3e-45 187.2 130 65.4
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 8.2e-44 182.6 131 69.5
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 7.0e-43 179.5 128 63.3
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 9.1e-43 179.1 160 55.0
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 1.6e-42 178.3 124 66.9
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 1.5e-40 171.8 131 64.1
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 3.2e-32 144.1 157 48.4
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 2.1e-31 141.4 133 54.9
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 8.0e-31 139.4 131 52.7
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 1.0e-30 139.0 132 53.0
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 2.8e-28 131.0 77 76.6
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 6.3e-28 129.8 76 80.3
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 6.1e-23 113.2 91 58.2
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 1.4e-22 112.1 83 60.2
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 1.5e-21 108.6 131 38.9
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 5.4e-19 100.1 145 35.9
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 4.6e-18 97.1 68 66.2
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 7.8e-18 96.3 125 38.4
Mapoly0002s0014 Marchantia polymorpha HOM05D006866 ORTHO05D008689 1.1e-16 92.4 128 34.4
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 2.5e-16 91.3 85 54.1
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 1.2e-15 89.0 63 65.1
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 1.2e-15 89.0 54 72.2
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 6.2e-15 86.7 125 37.6
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 3.1e-14 84.3 42 88.1
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.2e-13 82.4 42 88.1
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.2e-13 82.4 42 88.1
EL10Ac8g19311 Beta vulgaris HOM05D006866 ORTHO05D008689 2.2e-12 78.2 40 85.0
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 8.3e-12 76.3 52 69.2
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 3.5e-10 70.9 114 34.2
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 4.6e-10 70.5 42 78.6
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 1.0e-09 69.3 54 59.3
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 4.3e-08 63.9 34 79.4
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 2.8e-07 61.2 34 82.4
CARHR141110 Cardamine hirsuta HOM05D006866 ORTHO05D008689 4.7e-07 60.5 42 57.1
CARHR180830 Cardamine hirsuta HOM05D006866 ORTHO05D008689 1.8e-06 58.5 42 54.8


User provided reference genes

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