Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 7.9e-64 246.9 121 100.0
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 5.2e-47 191.0 104 89.4
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 2.6e-46 188.7 104 88.5
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 2.6e-46 188.7 104 88.5
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 1.3e-45 186.4 104 85.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.3e-45 186.4 104 86.5
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 1.7e-45 186.0 104 86.5
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 1.7e-45 186.0 104 86.5
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 3.7e-45 184.9 104 85.6
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 4.8e-45 184.5 104 85.6
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 8.3e-45 183.7 104 82.7
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 1.1e-44 183.3 104 84.6
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.1e-44 183.3 104 84.6
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 1.4e-44 183.0 104 84.6
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 1.8e-44 182.6 105 82.9
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 1.8e-44 182.6 105 82.9
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 1.8e-44 182.6 104 83.7
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 2.4e-44 182.2 104 85.6
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 2.4e-44 182.2 108 78.7
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 3.1e-44 181.8 104 85.6
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 4.1e-44 181.4 104 83.7
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 5.4e-44 181.0 104 82.7
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 7.0e-44 180.6 104 84.6
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 7.0e-44 180.6 108 78.7
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 1.2e-43 179.9 108 77.8
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 1.2e-43 179.9 108 77.8
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 1.2e-43 179.9 104 83.7
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 1.2e-43 179.9 104 83.7
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 1.6e-43 179.5 104 82.7
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 1.6e-43 179.5 104 82.7
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 2.7e-43 178.7 104 82.7
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 2.7e-43 178.7 104 80.8
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 2.7e-43 178.7 104 81.7
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 3.5e-43 178.3 104 82.7
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 3.5e-43 178.3 104 83.7
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 3.5e-43 178.3 104 83.7
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 3.5e-43 178.3 104 81.7
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 4.5e-43 177.9 104 81.7
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 4.5e-43 177.9 104 81.7
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.5e-43 177.9 104 83.7
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 5.9e-43 177.6 104 82.7
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 5.9e-43 177.6 104 83.7
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 5.9e-43 177.6 104 83.7
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 7.7e-43 177.2 104 82.7
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 7.7e-43 177.2 104 82.7
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 7.7e-43 177.2 104 82.7
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 7.7e-43 177.2 104 83.7
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 1.0e-42 176.8 104 82.7
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 1.0e-42 176.8 104 82.7
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 1.0e-42 176.8 104 83.7
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 1.3e-42 176.4 104 82.7
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.3e-42 176.4 104 81.7
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 1.7e-42 176.0 104 80.8
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 2.9e-42 175.3 104 81.7
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.9e-42 175.3 104 81.7
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 3.8e-42 174.9 104 81.7
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 5.0e-42 174.5 104 77.9
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 5.0e-42 174.5 104 82.7
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 6.5e-42 174.1 104 79.8
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 6.5e-42 174.1 104 79.8
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 8.5e-42 173.7 104 80.8
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 1.1e-41 173.3 104 81.7
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.1e-41 173.3 104 81.7
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 1.5e-41 172.9 104 79.8
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.5e-41 172.9 104 76.9
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 3.2e-41 171.8 104 78.8
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 3.2e-41 171.8 104 78.8
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 3.2e-41 171.8 104 78.8
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 3.2e-41 171.8 104 79.8
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 3.2e-41 171.8 104 79.8
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 3.2e-41 171.8 104 78.8
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 7.2e-41 170.6 104 76.0
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 9.5e-41 170.2 104 78.8
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 9.5e-41 170.2 104 76.9
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 9.5e-41 170.2 104 76.9
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 1.2e-40 169.9 104 77.9
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 1.2e-40 169.9 104 76.9
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 1.2e-40 169.9 104 78.8
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 1.2e-40 169.9 104 78.8
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 1.6e-40 169.5 104 78.8
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 1.6e-40 169.5 104 76.9
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 4.7e-40 167.9 104 75.0
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 6.1e-40 167.5 104 76.9
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 1.8e-39 166.0 104 75.0
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 2.3e-39 165.6 104 76.0
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 5.2e-39 164.5 104 76.9
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.2e-38 163.3 104 75.0
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 2.0e-38 162.5 104 73.1
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 2.6e-38 162.2 118 69.5
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 2.6e-38 162.2 104 74.0
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 2.6e-38 162.2 104 76.9
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 3.4e-38 161.8 104 76.9
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 7.5e-38 160.6 105 76.2
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 3.7e-37 158.3 104 75.0
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 5.9e-35 151.0 104 67.3
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.0e-34 150.2 104 75.0
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 3.8e-34 148.3 87 81.6
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.1e-32 142.5 110 63.6
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 3.0e-31 138.7 110 61.8
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 1.7e-29 132.9 104 65.4
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 3.7e-29 131.7 108 61.1
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 9.2e-28 127.1 104 62.5
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 3.3e-25 118.6 104 56.7
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 2.8e-24 115.5 104 59.6
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 4.7e-24 114.8 102 56.9
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.8e-23 112.8 62 79.0
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 9.8e-22 107.1 88 61.4
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.5e-17 92.4 62 71.0
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.2e-13 79.3 43 79.1
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.6e-11 73.2 52 71.2
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 4.6e-11 71.6 107 44.9
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 5.2e-07 58.2 104 32.7


User provided reference genes

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