Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 0.0e+00 1117.1 572 100.0
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 5.6e-184 648.3 564 61.3
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 1.6e-183 646.7 562 61.9
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 5.2e-182 641.7 563 60.2
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 2.1e-178 629.8 561 61.0
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 2.7e-178 629.4 569 59.8
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 4.6e-178 628.6 564 60.3
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 3.0e-177 625.9 564 60.3
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 4.3e-176 622.1 562 61.0
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 7.3e-176 621.3 564 59.9
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.1e-174 617.5 562 60.3
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 6.9e-174 614.8 557 58.9
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.2e-173 614.0 564 58.5
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 3.8e-172 609.0 564 58.9
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 1.9e-171 606.7 560 59.5
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 1.2e-170 604.0 564 57.8
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 3.5e-170 602.4 604 54.6
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 5.1e-169 598.6 564 58.2
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 8.7e-169 597.8 564 57.4
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 9.6e-168 594.3 562 57.5
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.1e-167 593.2 563 56.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 6.2e-167 591.7 562 56.6
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 6.2e-167 591.7 563 57.0
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 8.1e-167 591.3 564 56.7
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 1.8e-166 590.1 576 55.6
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 1.2e-165 587.4 562 55.5
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 2.0e-165 586.6 577 55.3
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.6e-165 586.3 562 55.5
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 3.4e-165 585.9 562 56.8
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 9.9e-165 584.3 563 55.8
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 1.3e-164 583.9 572 55.9
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 2.9e-164 582.8 569 55.4
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 5.4e-163 578.6 564 54.8
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 1.2e-162 577.4 564 54.8
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 1.6e-162 577.0 564 54.8
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 2.7e-162 576.2 563 56.1
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 2.7e-162 576.2 562 54.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 1.0e-161 574.3 572 53.8
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 1.8e-161 573.5 564 54.3
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 2.3e-161 573.2 568 55.1
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 8.7e-161 571.2 601 53.7
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 5.6e-160 568.5 562 53.9
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 9.6e-160 567.8 561 54.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.5e-157 560.5 565 53.8
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 3.4e-157 559.3 571 52.7
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 1.7e-156 557.0 570 53.9
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 1.7e-156 557.0 567 53.6
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 1.7e-156 557.0 564 53.0
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 1.4e-155 553.9 564 53.0
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 3.2e-155 552.7 566 53.2
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 5.5e-155 552.0 635 50.4
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 1.2e-154 550.8 563 51.9
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 4.6e-154 548.9 563 53.6
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 6.0e-154 548.5 562 51.4
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.0e-153 547.7 564 54.4
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 2.3e-153 546.6 565 54.2
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.9e-153 545.8 564 54.1
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 3.9e-153 545.8 565 53.3
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.5e-152 543.1 564 53.7
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.3e-152 542.7 564 54.3
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 5.6e-152 542.0 494 57.3
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 1.3e-151 540.8 564 52.8
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 2.1e-151 540.0 564 52.5
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 4.0e-150 535.8 564 51.6
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 1.4e-147 527.3 565 52.4
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 2.7e-146 523.1 566 52.7
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 3.5e-146 522.7 570 52.6
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 2.3e-145 520.0 566 52.3
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 2.2e-140 503.4 563 48.0
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 2.5e-139 500.0 544 51.8
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 3.2e-139 499.6 563 49.6
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 4.2e-139 499.2 568 50.0
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 9.4e-139 498.0 562 49.6
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 2.7e-138 496.5 564 50.4
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 6.1e-138 495.4 557 49.6
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 1.4e-137 494.2 558 49.3
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 2.3e-137 493.4 562 49.1
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 3.9e-137 492.7 564 49.3
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 5.1e-137 492.3 557 49.0
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 8.8e-137 491.5 569 48.0
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 1.4e-134 484.2 563 48.1
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.1e-134 482.6 562 49.1
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 9.1e-134 481.5 563 48.1
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 1.3e-132 477.6 568 46.7
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.2e-130 471.1 561 47.4
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 6.1e-130 468.8 587 46.3
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 1.0e-129 468.0 563 48.3
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 8.8e-129 464.9 569 46.7
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 1.5e-128 464.2 567 46.9
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 3.1e-126 456.4 563 44.9
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 6.1e-114 415.6 561 44.4
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.4e-110 403.7 412 53.2
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 3.1e-110 403.3 362 61.0
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.0e-100 371.7 573 38.9
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 5.5e-99 365.9 399 49.4
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 8.3e-95 352.1 314 58.9
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 8.6e-84 315.5 393 46.3
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 6.4e-79 299.3 570 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 6.0e-77 292.7 563 34.3
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 6.6e-76 289.3 560 32.7
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.9e-68 263.5 201 67.2
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 2.5e-67 260.8 593 31.9
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 3.6e-58 230.3 357 39.2
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 1.7e-55 221.5 549 30.1
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 3.3e-51 207.2 572 30.1
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 2.9e-47 194.1 512 30.7
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 4.2e-46 190.3 225 48.9
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 4.2e-46 190.3 225 48.9
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.2e-39 167.9 179 49.2
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 6.5e-39 166.4 179 49.2
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 8.7e-36 156.0 201 45.3
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 1.1e-35 155.6 202 41.6
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 1.8e-33 148.3 161 51.6
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 2.6e-32 144.4 161 50.3
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 3.4e-32 144.1 161 50.9
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 4.5e-32 143.7 161 50.3
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 5.8e-32 143.3 161 49.7
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.3e-31 142.1 205 41.0
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 3.2e-30 137.5 153 49.0
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 4.6e-29 133.7 477 26.2
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.6e-29 133.7 249 34.5
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.3e-28 132.1 163 46.0
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.4e-25 121.3 151 47.7
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 8.5e-15 86.3 194 28.9
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 5.1e-12 77.0 50 68.0
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.0e-11 75.1 54 68.5
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 9.1e-09 66.2 59 52.5
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 9.1e-09 66.2 59 52.5
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 5.0e-07 60.5 92 43.5
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 9.4e-06 56.2 58 50.0


User provided reference genes

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