Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 4.0e-54 214.5 111 100.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.1e-24 116.7 70 80.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.9e-24 115.9 70 81.4
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.3e-23 113.2 70 78.6
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 2.1e-23 112.5 70 78.6
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 4.8e-23 111.3 70 75.7
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 4.8e-23 111.3 70 75.7
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 4.8e-23 111.3 70 80.0
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 4.8e-23 111.3 70 77.1
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 4.8e-23 111.3 70 74.3
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 6.2e-23 110.9 70 78.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 6.2e-23 110.9 70 78.6
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 8.2e-23 110.5 72 75.0
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.1e-22 110.2 70 74.3
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.8e-22 109.4 70 77.1
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 2.4e-22 109.0 70 75.7
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 3.1e-22 108.6 70 77.1
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 3.1e-22 108.6 70 74.3
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 4.0e-22 108.2 70 78.6
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 4.0e-22 108.2 70 75.7
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 4.0e-22 108.2 70 75.7
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 5.3e-22 107.8 70 74.3
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 5.3e-22 107.8 70 77.1
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 6.9e-22 107.5 69 78.3
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.0e-21 105.9 70 75.7
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.6e-21 105.5 70 72.9
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.6e-21 105.5 70 71.4
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.4e-21 105.1 71 74.6
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 3.4e-21 105.1 70 72.9
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.4e-21 105.1 67 74.6
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 4.5e-21 104.8 71 74.6
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 5.8e-21 104.4 70 72.9
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.3e-20 103.2 70 71.4
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.3e-20 103.2 73 71.2
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.7e-20 102.8 70 70.0
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.7e-20 102.8 70 72.9
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.7e-20 102.8 70 72.9
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.7e-20 102.8 72 69.4
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.7e-20 102.8 70 72.9
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.2e-20 102.4 70 71.4
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 3.8e-20 101.7 70 68.6
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.8e-20 101.7 70 70.0
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.8e-20 101.7 70 71.4
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.9e-20 101.3 70 68.6
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 6.5e-20 100.9 71 70.4
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 6.5e-20 100.9 71 70.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 6.5e-20 100.9 71 70.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 6.5e-20 100.9 71 70.4
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 6.5e-20 100.9 71 70.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 6.5e-20 100.9 70 68.6
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 6.5e-20 100.9 72 66.7
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.4e-20 100.5 70 71.4
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 8.4e-20 100.5 72 69.4
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 8.4e-20 100.5 70 67.1
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.1e-19 100.1 71 69.0
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.1e-19 100.1 70 67.1
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.1e-19 100.1 70 70.0
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.1e-19 100.1 70 70.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.9e-19 99.4 71 67.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.5e-19 99.0 70 70.0
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 2.5e-19 99.0 70 70.0
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 3.2e-19 98.6 71 66.2
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 3.2e-19 98.6 70 70.0
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 3.2e-19 98.6 71 69.0
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-19 97.4 70 67.1
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 9.3e-19 97.1 71 64.8
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 9.3e-19 97.1 70 68.6
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 9.3e-19 97.1 72 63.9
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.2e-18 96.7 72 68.1
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.1e-18 95.9 72 68.1
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.1e-18 95.9 72 68.1
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 2.1e-18 95.9 71 64.8
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 2.1e-18 95.9 69 66.7
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 3.5e-18 95.1 72 65.3
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 3.5e-18 95.1 70 67.1
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.0e-17 93.6 72 63.9
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.3e-17 93.2 67 68.7
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.8e-17 92.8 70 64.3
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.8e-17 92.8 72 61.1
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.3e-17 92.4 70 62.9
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 2.3e-17 92.4 93 55.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 3.0e-17 92.0 70 67.1
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 3.9e-17 91.7 72 66.7
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 3.9e-17 91.7 70 61.4
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 5.1e-17 91.3 74 66.2
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 5.1e-17 91.3 74 66.2
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 5.1e-17 91.3 74 66.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 8.7e-17 90.5 72 63.9
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 3.3e-16 88.6 70 61.4
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 4.3e-16 88.2 72 62.5
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 7.4e-16 87.4 71 64.8
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.3e-15 86.7 69 66.7
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.6e-15 86.3 70 65.7
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.8e-15 85.5 69 65.2
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 3.7e-15 85.1 69 59.4
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.8e-14 82.8 72 55.6
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 4.1e-14 81.6 72 62.5
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.5e-13 79.7 58 67.2
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 4.5e-13 78.2 72 58.3
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.2e-12 75.9 74 52.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.1e-11 73.6 70 54.3
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.1e-11 73.6 67 55.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-10 69.3 72 47.2
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-09 66.6 74 50.0
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-09 65.5 72 47.2
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-09 65.5 70 41.4
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-09 65.5 76 48.7
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-08 63.2 76 51.3
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-08 62.8 80 45.0
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-08 62.8 76 52.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-08 61.2 70 45.7
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-08 61.2 71 40.8
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-06 55.8 64 45.3


User provided reference genes

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