Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.4e-134 483.0 248 100.0
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 4.0e-62 242.3 147 83.7
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.0e-61 240.0 147 83.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.0e-61 240.0 144 84.0
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.6e-61 239.6 150 80.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 9.9e-61 237.7 150 74.7
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.3e-60 237.3 148 77.0
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 2.2e-60 236.5 148 78.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.8e-60 235.7 144 78.5
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 4.9e-60 235.3 150 74.0
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 6.4e-60 235.0 147 82.3
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 6.4e-60 235.0 150 79.3
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 3.2e-59 232.6 152 79.6
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 4.2e-59 232.3 150 72.7
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 9.2e-59 231.1 147 74.1
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.2e-58 230.7 148 77.0
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.2e-58 230.7 148 75.0
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.6e-58 230.3 148 75.0
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.7e-58 229.6 150 74.7
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 4.6e-58 228.8 150 78.0
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.0e-58 228.4 159 73.0
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 6.0e-58 228.4 146 77.4
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 6.0e-58 228.4 150 78.0
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 6.0e-58 228.4 150 78.0
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.0e-57 227.6 147 78.9
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.3e-57 227.3 149 74.5
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 1.3e-57 227.3 148 74.3
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.3e-57 226.5 148 74.3
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.9e-57 225.7 146 74.0
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 8.7e-57 224.6 150 72.7
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 8.7e-57 224.6 148 75.0
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 8.7e-57 224.6 142 74.6
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 8.7e-57 224.6 147 74.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.1e-56 224.2 149 76.5
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.1e-56 224.2 148 75.0
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.9e-56 223.4 143 72.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.5e-56 223.0 142 73.9
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.5e-56 223.0 145 71.7
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.3e-56 222.6 149 74.5
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.3e-56 222.2 142 74.6
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.3e-56 222.2 142 73.9
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 4.3e-56 222.2 148 73.6
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.6e-56 221.9 142 73.2
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 7.3e-56 221.5 148 79.1
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 9.6e-56 221.1 147 76.9
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 9.6e-56 221.1 142 73.9
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 2.1e-55 219.9 148 73.6
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 2.1e-55 219.9 148 72.3
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.1e-55 219.9 147 70.7
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.6e-55 219.2 149 77.2
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.4e-54 217.2 158 72.8
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 3.1e-54 216.1 147 71.4
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 4.0e-54 215.7 142 73.9
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 4.0e-54 215.7 147 72.8
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 5.3e-54 215.3 147 74.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-53 213.8 144 71.5
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.0e-53 213.4 144 73.6
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 3.4e-53 212.6 150 69.3
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.3e-52 210.7 150 69.3
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.7e-52 210.3 150 68.7
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.1e-51 207.6 117 83.8
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.9e-51 206.8 144 70.8
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.9e-51 206.8 161 64.6
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.4e-51 206.5 117 82.1
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.2e-51 206.1 149 69.8
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 9.3e-51 204.5 161 62.7
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 9.3e-51 204.5 117 82.1
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.6e-50 203.8 141 73.0
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.6e-50 203.8 148 65.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 2.7e-50 203.0 116 81.9
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.7e-50 203.0 117 82.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 7.8e-50 201.4 148 66.2
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.0e-49 201.1 142 69.7
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.3e-49 200.7 148 64.2
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.1e-48 197.6 148 70.9
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.3e-47 194.1 148 71.6
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 6.2e-47 191.8 149 67.1
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 6.2e-47 191.8 149 67.1
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.4e-46 190.7 144 66.7
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.4e-46 190.7 149 66.4
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.4e-46 189.9 200 57.0
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 6.9e-46 188.3 142 66.2
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.0e-46 188.0 156 62.2
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 9.9e-45 184.5 146 61.0
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.3e-44 184.1 146 61.0
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-44 184.1 104 84.6
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-44 184.1 104 84.6
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-44 184.1 104 84.6
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.3e-44 184.1 104 84.6
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 4.9e-44 182.2 158 58.9
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 6.4e-44 181.8 146 61.6
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 1.4e-43 180.6 160 58.8
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.9e-43 180.3 147 61.2
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 4.6e-42 175.6 146 59.6
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.6e-42 175.6 147 65.3
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.6e-42 175.6 147 65.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 7.9e-42 174.9 105 81.0
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 7.9e-42 174.9 105 81.0
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 2.3e-41 173.3 147 64.6
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-40 170.2 158 56.3
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.5e-40 169.9 143 58.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 9.6e-40 167.9 115 70.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 8.1e-39 164.9 155 60.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 3.1e-38 162.9 153 59.5
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-37 160.6 143 58.0
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.6e-37 159.8 108 73.1
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 3.4e-37 159.5 99 75.8
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 4.5e-37 159.1 98 76.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 4.5e-37 159.1 177 53.1
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 2.2e-36 156.8 96 76.0
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 2.9e-36 156.4 99 74.7
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 2.9e-36 156.4 99 74.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 2.9e-36 156.4 96 76.0
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.8e-36 156.0 96 76.0
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.4e-35 154.1 96 75.0
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 2.1e-34 150.2 142 58.5
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.7e-34 149.8 94 73.4
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 6.0e-34 148.7 96 71.9
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.0e-33 147.9 154 52.6
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.9e-33 146.0 84 84.5
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 8.7e-33 144.8 149 53.7
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.5e-32 144.1 85 80.0
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.5e-32 144.1 110 66.4
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.5e-32 144.1 93 73.1
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.5e-32 143.3 147 53.1
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-31 140.6 111 66.7
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.8e-31 139.8 146 55.5
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-31 138.7 73 89.0
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-30 136.3 77 84.4
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-27 126.7 68 83.8
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 3.2e-27 126.3 96 63.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 9.7e-24 114.8 115 48.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-23 113.6 59 89.8
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-22 110.9 58 87.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-22 110.2 59 88.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-22 109.0 59 88.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.1e-18 97.1 116 46.6
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 6.1e-18 95.5 146 40.4
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 2.0e-16 90.5 135 37.8
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.2e-15 87.0 65 67.7
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-15 87.0 49 83.7
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 6.9e-14 82.0 65 53.8
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.7e-12 77.4 138 33.3
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 6.5e-12 75.5 66 48.5
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-10 70.5 78 44.9
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-09 67.8 65 50.8
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.0e-06 55.5 49 53.1


User provided reference genes

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