Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.1e-232 809.7 415 100.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.5e-65 251.9 284 52.1
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.4e-61 239.6 290 52.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.7e-61 239.2 264 53.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 2.6e-58 230.3 292 50.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 6.5e-57 225.7 306 47.7
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-56 224.9 290 49.7
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.1e-56 224.9 290 49.7
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 7.2e-56 222.2 302 47.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.6e-55 221.1 298 47.7
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.7e-55 220.3 288 47.9
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.6e-55 219.9 298 46.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 6.1e-55 219.2 279 49.1
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 7.9e-55 218.8 271 50.2
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.0e-54 216.9 274 48.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 6.7e-54 215.7 257 51.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 8.8e-54 215.3 276 50.7
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.5e-53 214.5 290 48.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 7.4e-53 212.2 285 48.4
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 6.3e-52 209.1 295 47.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.0e-49 201.8 229 52.0
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.3e-49 201.4 263 46.4
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.0e-49 199.5 202 55.9
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 6.5e-49 199.1 268 45.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 6.5e-49 199.1 277 46.6
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.9e-48 197.6 278 45.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.9e-48 197.6 278 45.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.5e-48 197.2 241 50.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.2e-48 196.4 264 46.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 9.4e-48 195.3 277 46.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 4.7e-47 193.0 274 45.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 8.0e-47 192.2 275 44.0
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.0e-46 191.8 221 48.0
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.0e-46 189.9 273 45.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 4.0e-46 189.9 281 47.7
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 5.2e-46 189.5 254 45.7
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.2e-45 188.3 277 46.2
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.5e-45 188.0 221 47.5
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.6e-45 187.2 274 45.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.6e-45 187.2 266 44.7
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.4e-45 186.4 269 48.0
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.7e-45 186.0 281 47.0
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.7e-45 186.0 264 45.5
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-44 184.5 295 43.4
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.7e-44 184.5 267 45.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.2e-44 184.1 252 44.8
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.8e-44 183.7 275 44.7
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.8e-44 183.7 266 44.4
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 8.2e-44 182.2 283 43.5
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.4e-43 181.4 294 40.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.4e-43 181.4 264 45.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 3.1e-43 180.3 292 40.4
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 5.3e-43 179.5 254 45.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 9.1e-43 178.7 277 40.8
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-42 178.3 200 51.5
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.2e-42 178.3 269 41.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.7e-42 177.2 275 41.1
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.5e-42 176.8 279 42.3
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.7e-42 175.6 276 44.2
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.3e-41 174.9 246 45.1
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.3e-41 174.9 279 41.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.7e-41 174.5 276 44.6
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.5e-41 172.6 270 42.2
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 8.5e-41 172.2 161 59.6
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 8.5e-41 172.2 278 42.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-40 171.8 265 41.1
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.5e-40 171.4 303 42.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.2e-40 169.9 292 41.4
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 4.2e-40 169.9 244 45.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 4.2e-40 169.9 249 45.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.2e-40 169.1 254 42.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 7.2e-40 169.1 298 39.3
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 9.4e-40 168.7 243 42.8
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-39 168.3 211 48.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 8.0e-39 165.6 165 57.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.0e-38 165.2 285 38.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.0e-38 165.2 236 44.5
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.3e-38 164.1 236 44.1
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.0e-38 163.7 261 43.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.2e-38 162.9 293 39.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.8e-38 162.5 259 41.3
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.2e-37 161.8 267 41.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.5e-37 161.4 234 47.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.6e-37 160.6 234 44.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.4e-37 160.2 267 41.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.4e-37 160.2 349 36.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 3.4e-37 160.2 227 44.5
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 4.4e-37 159.8 287 37.6
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 4.4e-37 159.8 255 43.1
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.7e-37 159.5 214 45.3
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.7e-37 159.5 214 45.3
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 5.7e-37 159.5 270 38.9
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.5e-37 159.1 238 42.9
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.7e-36 157.9 243 44.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.8e-35 154.5 233 41.6
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.1e-35 153.7 246 40.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.1e-35 153.7 231 43.3
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 3.1e-35 153.7 254 43.3
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.1e-35 153.7 255 42.0
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 9.1e-35 152.1 238 40.3
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.2e-34 151.8 273 39.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.0e-34 151.0 248 44.0
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 5.9e-34 149.4 160 53.8
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 5.9e-34 149.4 231 42.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.9e-33 147.1 218 45.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.9e-33 147.1 113 65.5
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.5e-32 144.8 260 41.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.9e-32 144.4 171 50.3
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.9e-32 144.4 256 38.3
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 4.2e-32 143.3 238 39.5
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.5e-32 142.9 107 67.3
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 9.5e-32 142.1 238 39.5
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.2e-31 141.7 124 58.1
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.1e-31 141.0 130 57.7
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.1e-31 141.0 140 55.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.4e-30 138.3 288 36.8
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-30 138.3 136 58.8
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.4e-30 138.3 266 38.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.3e-30 137.5 148 52.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 6.8e-30 136.0 169 46.7
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.5e-29 134.8 194 47.9
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.0e-29 134.4 289 37.4
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.6e-29 134.0 270 38.1
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.6e-29 134.0 201 46.3
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 4.4e-29 133.3 267 37.1
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 6.3e-28 129.4 197 40.1
Cpa.g.sc66.128 Carica papaya HOM05D013729 ORTHO05D010193 2.4e-27 127.5 114 57.0
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 7.0e-27 125.9 135 52.6
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-26 125.2 211 39.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.9e-26 122.9 215 41.9
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.3e-25 120.9 262 35.9
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-24 118.6 227 38.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.5e-21 108.2 263 33.5
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 3.4e-21 107.1 258 33.3
Cpa.g.sc5.84 Carica papaya HOM05D023535 ORTHO05D000004 1.3e-20 105.1 89 67.4
Cpa.g.c41516 Carica papaya HOM05D013729 ORTHO05D010193 6.4e-20 102.8 114 47.4
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.1e-19 102.1 99 56.6
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.0e-17 95.5 178 37.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.0e-17 94.0 163 38.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 5.0e-17 93.2 77 61.0
Cpa.g.sc32.153 Carica papaya HOM05D008736 ORTHO05D010193 1.2e-15 88.6 117 37.6
Cpa.g.sc159.5 Carica papaya HOM05D013729 ORTHO05D004901 2.3e-14 84.3 61 67.2
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.2e-13 82.0 265 31.3
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 7.5e-13 79.3 122 41.8
Cpa.g.sc245.14 Carica papaya HOM05D008736 ORTHO05D010193 8.3e-12 75.9 112 37.5
Cpa.g.c39128 Carica papaya HOM05D013729 ORTHO05D010193 1.9e-11 74.7 60 51.7
Cpa.g.sc169.9 Carica papaya HOM05D013729 ORTHO05D010193 2.4e-11 74.3 69 44.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.4e-11 74.3 183 31.7
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.2e-10 72.0 52 69.2
Cpa.g.sc91.74 Carica papaya HOM05D008736 ORTHO05D010193 2.0e-10 71.2 113 35.4
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 6.0e-10 69.7 78 46.2
Cpa.g.sc34.7 Carica papaya HOM05D008736 ORTHO05D010193 6.0e-10 69.7 112 33.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 7.8e-10 69.3 78 46.2
Cpa.g.sc146.60 Carica papaya HOM05D001092 ORTHO05D010193 1.0e-09 68.9 108 33.3
Cpa.g.sc111.38 Carica papaya HOM05D008736 ORTHO05D010193 6.6e-09 66.2 110 34.5
Cpa.g.sc5162.1 Carica papaya HOM05D019902 ORTHO05D010193 6.6e-09 66.2 109 33.0
Cpa.g.sc66.107 Carica papaya HOM05D008736 ORTHO05D010193 1.1e-08 65.5 112 33.0
Cpa.g.sc88.11 Carica papaya HOM05D008736 ORTHO05D010193 1.1e-08 65.5 86 40.7
Cpa.g.sc10.110 Carica papaya HOM05D008736 ORTHO05D010193 1.9e-08 64.7 112 30.4
Cpa.g.sc30.108 Carica papaya HOM05D003515 ORTHO05D010193 5.6e-08 63.2 82 39.0
Cpa.g.sc14.162 Carica papaya HOM05D002615 ORTHO05D002913 9.5e-08 62.4 61 49.2
Cpa.g.c31806.2 Carica papaya HOM05D008736 ORTHO05D010193 1.2e-07 62.0 94 34.0
Cpa.g.sc462.4 Carica papaya HOM05D000555 ORTHO05D010193 1.2e-07 62.0 100 32.0
Cpa.g.sc205.22 Carica papaya HOM05D008736 ORTHO05D010193 2.1e-07 61.2 92 37.0
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 2.8e-07 60.8 63 52.4
Cpa.g.sc94.67 Carica papaya HOM05D008736 ORTHO05D010193 2.8e-07 60.8 86 37.2
Cpa.g.sc163.25 Carica papaya HOM05D013729 ORTHO05D118659 3.6e-07 60.5 110 40.0
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 3.6e-07 60.5 76 46.1
Cpa.g.sc2.217 Carica papaya HOM05D008736 ORTHO05D010193 8.1e-07 59.3 115 29.6
Cpa.g.sc25.168 Carica papaya HOM05D008736 ORTHO05D010193 8.1e-07 59.3 108 30.6
Cpa.g.c44697.1 Carica papaya HOM05D008736 ORTHO05D010193 1.1e-06 58.9 91 33.0
Cpa.g.c40706 Carica papaya HOM05D008736 ORTHO05D010193 2.3e-06 57.8 91 37.4
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 3.1e-06 57.4 105 29.5
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 4.0e-06 57.0 40 60.0
Cpa.g.c39278 Carica papaya HOM05D008736 ORTHO05D010193 4.0e-06 57.0 91 34.1


User provided reference genes

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