Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 3.8e-54 214.5 105 100.0
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.1e-26 123.2 80 71.2
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.6e-26 122.1 80 68.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.6e-26 122.1 80 68.8
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.3e-25 119.8 81 70.4
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 3.7e-25 118.2 80 70.0
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 4.8e-25 117.9 89 64.0
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 6.3e-25 117.5 80 67.5
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.4e-24 115.5 79 67.1
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.1e-24 115.2 80 65.0
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 3.1e-24 115.2 80 67.5
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 4.1e-24 114.8 80 67.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.3e-24 114.4 86 62.8
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 9.1e-24 113.6 80 67.5
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 9.1e-24 113.6 80 68.8
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.2e-23 113.2 79 69.6
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.2e-23 113.2 80 70.0
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 1.6e-23 112.8 81 66.7
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.7e-23 112.1 89 57.3
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 2.7e-23 112.1 89 57.3
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 2.7e-23 112.1 81 66.7
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 2.7e-23 112.1 80 66.2
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 3.5e-23 111.7 80 66.2
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 4.5e-23 111.3 81 65.4
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 5.9e-23 110.9 80 65.0
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 7.7e-23 110.5 81 65.4
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.0e-22 110.2 89 59.6
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.0e-22 110.2 92 59.8
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.0e-22 110.2 92 59.8
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 1.7e-22 109.4 81 63.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 1.7e-22 109.4 93 59.1
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.2e-22 109.0 93 60.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.2e-22 109.0 80 63.8
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 2.2e-22 109.0 81 65.4
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 2.2e-22 109.0 93 59.1
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 5.0e-22 107.8 81 63.0
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 6.5e-22 107.5 89 56.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 6.5e-22 107.5 80 65.0
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.5e-22 107.1 80 61.2
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 8.5e-22 107.1 89 57.3
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 8.5e-22 107.1 81 63.0
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.1e-21 106.7 81 65.4
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.5e-21 106.3 81 63.0
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 1.9e-21 105.9 81 63.0
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.9e-21 105.9 81 63.0
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-21 105.9 80 63.8
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.9e-21 105.9 93 57.0
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.5e-21 105.5 84 63.1
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 3.2e-21 105.1 81 63.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 3.2e-21 105.1 80 65.0
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.2e-21 105.1 80 61.2
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 4.2e-21 104.8 81 64.2
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 4.2e-21 104.8 80 61.2
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 4.2e-21 104.8 81 64.2
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 4.2e-21 104.8 92 54.3
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.5e-21 104.4 80 62.5
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 7.2e-21 104.0 80 61.2
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 7.2e-21 104.0 89 57.3
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 7.2e-21 104.0 91 57.1
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 9.4e-21 103.6 80 60.0
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.2e-20 103.2 80 61.2
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.2e-20 103.2 92 54.3
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.1e-20 102.4 81 60.5
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.1e-20 102.4 81 60.5
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 2.1e-20 102.4 80 61.2
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.7e-20 102.1 89 56.2
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 2.7e-20 102.1 80 60.0
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.7e-20 102.1 80 61.2
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 3.6e-20 101.7 89 51.7
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.7e-20 101.3 89 51.7
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 6.1e-20 100.9 91 52.7
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 8.0e-20 100.5 89 52.8
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 1.0e-19 100.1 80 62.5
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.4e-19 99.8 81 59.3
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.4e-19 99.8 81 59.3
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 1.4e-19 99.8 81 59.3
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.4e-19 99.8 81 61.7
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 2.3e-19 99.0 89 51.7
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.0e-19 98.6 80 57.5
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 3.0e-19 98.6 81 61.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 4.0e-19 98.2 81 58.0
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 8.8e-19 97.1 80 60.0
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 8.8e-19 97.1 89 51.7
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 8.8e-19 97.1 89 51.7
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 4.4e-18 94.7 80 57.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 5.7e-18 94.4 80 57.5
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 5.7e-18 94.4 75 60.0
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 7.5e-18 94.0 80 57.5
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.7e-17 92.8 93 51.6
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.7e-17 91.7 80 53.8
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 8.3e-17 90.5 72 58.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 8.3e-17 90.5 57 70.2
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.8e-16 89.4 81 49.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.8e-16 89.4 89 47.2
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.8e-16 89.4 92 54.3
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.8e-14 81.6 88 47.7
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.1e-13 80.1 81 53.1
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 3.2e-13 78.6 86 46.5
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.7e-12 74.7 64 57.8
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.7e-10 67.8 92 40.2


User provided reference genes

Program Settings