Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 7.4e-312 1073.2 538 100.0
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.2e-238 828.9 538 78.6
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.1e-237 826.6 538 78.6
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.6e-236 822.8 539 79.4
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 3.3e-234 815.1 538 77.7
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.3e-234 815.1 536 79.1
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.3e-230 803.1 537 76.5
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.3e-230 803.1 539 77.6
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.7e-230 802.7 539 77.7
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-230 802.7 541 77.3
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.1e-229 798.5 541 76.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.0e-227 793.5 530 77.5
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.3e-227 792.3 538 74.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.9e-227 792.0 536 75.9
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 5.6e-226 787.7 523 78.0
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 7.3e-226 787.3 530 77.2
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.2e-225 786.6 559 73.5
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.8e-225 785.4 472 83.1
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 8.0e-225 783.9 517 77.2
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 3.1e-224 781.9 484 80.4
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 3.1e-224 781.9 498 79.7
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 4.0e-224 781.6 441 87.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.8e-224 780.8 479 81.4
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.0e-223 779.2 440 86.1
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 4.4e-223 778.1 479 80.2
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.9e-222 775.4 541 74.5
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 4.9e-222 774.6 516 76.6
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 6.4e-222 774.2 479 79.5
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.0e-221 770.8 524 76.3
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 7.0e-221 770.8 461 82.6
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.2e-220 770.0 524 76.7
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.6e-220 769.6 445 85.4
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 2.7e-220 768.8 531 75.0
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.3e-219 765.8 542 73.1
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.3e-219 765.8 539 73.7
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.3e-219 765.8 445 85.2
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.0e-219 765.4 497 78.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.0e-219 764.6 544 74.3
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.0e-219 764.6 455 81.8
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 5.0e-219 764.6 464 81.7
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 8.6e-219 763.8 490 78.2
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 8.6e-219 763.8 448 83.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.1e-218 763.5 473 81.2
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 7.3e-218 760.8 464 80.4
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 6.2e-217 757.7 543 73.5
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.1e-216 756.9 438 83.8
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.4e-216 756.5 434 83.9
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-216 756.1 441 83.4
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 5.2e-216 754.6 539 72.0
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.2e-216 754.6 499 77.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.2e-215 753.4 438 83.6
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.5e-215 753.1 536 73.3
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.0e-215 752.7 440 83.9
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 2.6e-215 752.3 519 73.8
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.4e-215 751.9 540 72.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 4.4e-215 751.5 538 74.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 4.4e-215 751.5 471 79.6
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 7.5e-215 750.7 442 82.8
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 7.5e-215 750.7 455 81.8
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.7e-214 749.6 441 83.9
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.9e-214 748.8 469 80.2
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.7e-214 748.4 536 73.1
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.1e-213 746.9 541 72.5
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.9e-213 746.1 461 80.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.2e-213 745.3 457 80.1
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 3.2e-213 745.3 524 74.0
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.1e-213 745.0 538 71.7
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 7.0e-213 744.2 535 72.3
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.6e-212 743.0 565 70.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 2.7e-212 742.3 540 71.1
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 2.7e-212 742.3 540 71.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 6.0e-212 741.1 462 79.0
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 6.0e-212 741.1 499 75.8
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.3e-211 740.0 437 82.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.9e-211 738.4 457 79.6
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.5e-210 735.7 531 72.9
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 5.6e-210 734.6 439 82.2
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.2e-209 733.4 522 71.8
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 2.1e-209 732.6 443 81.3
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.4e-208 729.9 434 81.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 4.0e-208 728.4 515 73.2
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.8e-208 727.6 439 80.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.9e-208 727.2 431 81.2
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.2e-207 726.9 441 79.8
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.2e-207 726.9 439 80.4
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.0e-207 726.1 542 70.8
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 2.6e-207 725.7 444 80.2
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 9.9e-207 723.8 539 70.3
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.9e-207 723.8 539 70.5
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.3e-206 723.4 436 80.7
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.2e-206 722.6 437 80.1
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.9e-206 722.2 549 68.7
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.4e-205 719.9 464 76.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.9e-205 719.5 437 78.5
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.4e-205 719.2 523 72.1
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 5.4e-205 718.0 525 71.4
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.4e-205 718.0 428 81.8
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 7.1e-205 717.6 434 80.6
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.1e-204 716.1 526 71.7
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 6.0e-204 714.5 524 72.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.1e-202 710.3 428 81.3
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 2.5e-202 709.1 426 81.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.1e-201 704.1 435 77.5
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.4e-200 702.6 487 73.9
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 4.0e-200 701.8 439 78.1
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 5.2e-200 701.4 450 75.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.0e-199 699.5 449 77.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.8e-199 698.0 536 70.0
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 3.2e-197 692.2 535 68.2
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 6.6e-195 684.5 455 76.0
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.4e-191 671.8 483 69.4
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.6e-191 671.0 399 83.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 8.4e-190 667.5 419 78.5
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.9e-182 642.5 426 71.1
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.1e-181 640.6 452 69.2
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.3e-179 633.6 521 61.8
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.4e-176 622.9 438 68.7
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.9e-173 613.2 431 68.4
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.8e-169 599.4 369 79.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.9e-160 568.2 405 74.6
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.1e-157 560.8 328 84.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 5.3e-152 542.0 410 70.7
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.4e-146 522.3 302 84.1
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.3e-145 520.8 328 78.4
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.9e-142 509.6 426 59.6
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.7e-140 503.1 344 73.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 3.6e-140 502.7 429 60.4
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.1e-140 501.9 299 83.3
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 8.8e-139 498.0 429 58.0
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-128 464.5 299 77.6
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.3e-123 446.8 277 78.3
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.8e-123 444.9 267 82.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 6.3e-121 438.7 424 55.7
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.8e-107 394.0 426 46.9
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.0e-103 379.0 242 78.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.3e-94 351.3 437 44.2
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-80 304.7 172 83.7
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.5e-74 284.6 387 40.8
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.0e-55 219.5 135 78.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.1e-54 216.5 177 66.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 8.4e-49 199.1 127 77.2
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.7e-45 185.7 114 78.1
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.2e-44 184.5 180 52.8
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 2.4e-43 181.0 116 73.3
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.9e-43 179.5 130 70.0
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-35 155.6 104 73.1
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.1e-35 155.6 104 73.1
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.4e-35 154.5 96 76.0
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 4.5e-34 150.2 90 82.2
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 6.1e-31 139.8 125 58.4
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 3.9e-30 137.1 125 57.6
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 4.4e-29 133.7 122 57.4
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 5.7e-29 133.3 198 44.4
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 2.2e-28 131.3 80 76.2
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.8e-27 128.3 110 61.8
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.8e-27 128.3 110 61.8
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 4.1e-27 127.1 164 50.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 9.4e-24 115.9 78 70.5
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 6.7e-22 109.8 82 69.5
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 6.3e-20 103.2 254 31.5
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.9e-17 94.4 53 84.9


User provided reference genes

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