Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.9e-210 734.9 361 100.0
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.7e-157 558.5 358 77.1
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.0e-154 550.4 352 77.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 8.5e-154 547.4 352 76.4
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-153 547.0 347 78.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.5e-153 545.8 333 80.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 5.5e-153 544.7 354 76.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 2.1e-152 542.7 358 75.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.7e-152 541.6 351 76.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.7e-152 541.6 347 78.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.8e-151 539.7 349 75.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.1e-151 538.1 357 75.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 6.7e-151 537.7 351 76.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.7e-151 537.7 356 75.6
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.7e-151 537.7 370 73.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.5e-150 536.6 332 78.6
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.5e-150 536.6 357 75.1
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 5.7e-150 534.6 350 76.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 7.4e-150 534.3 350 76.9
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.7e-149 533.1 357 74.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 6.3e-149 531.2 351 75.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.1e-148 530.4 359 73.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-148 530.4 351 74.6
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-148 530.4 360 73.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-148 530.0 350 76.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.4e-148 530.0 357 73.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.8e-148 529.6 351 74.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.8e-148 529.6 351 74.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.8e-148 529.6 354 73.4
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.4e-148 529.3 361 75.3
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.1e-148 528.5 329 78.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 7.0e-148 527.7 354 73.2
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.0e-148 527.7 352 75.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.0e-148 527.7 354 74.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.6e-147 525.8 351 74.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.9e-147 524.6 330 79.1
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.0e-146 523.9 360 72.5
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.3e-146 523.5 351 73.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-146 522.3 334 77.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.5e-146 521.2 333 76.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 8.5e-146 520.8 358 72.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.1e-145 520.4 329 77.2
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-145 520.0 333 77.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.9e-145 519.6 355 74.6
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.9e-145 519.6 332 77.7
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.2e-145 518.8 348 73.6
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 4.2e-145 518.5 346 73.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.5e-145 518.1 374 72.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 9.4e-145 517.3 333 75.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-144 515.8 351 74.4
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.7e-144 515.0 335 74.3
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 8.0e-144 514.2 351 72.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-143 513.5 335 76.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.4e-143 513.5 354 72.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.8e-143 513.1 331 75.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.8e-143 513.1 333 74.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.8e-143 513.1 352 72.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.8e-143 513.1 355 72.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.3e-143 512.7 337 74.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.3e-143 512.7 334 75.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.0e-143 512.3 334 75.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 4.0e-143 511.9 333 78.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 5.2e-143 511.5 337 74.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.2e-143 511.5 355 72.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.7e-143 511.1 329 76.3
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 6.7e-143 511.1 379 69.1
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-142 510.4 355 73.0
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.6e-142 509.2 341 73.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 5.7e-142 508.1 333 74.5
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 5.7e-142 508.1 369 70.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.5e-142 507.7 350 72.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.7e-142 507.3 339 74.6
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.3e-141 506.9 327 74.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.7e-141 506.5 345 73.0
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.8e-141 505.8 351 72.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.8e-141 505.0 368 69.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.3e-141 504.6 324 77.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.3e-141 504.6 383 67.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 6.3e-141 504.6 350 72.6
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.1e-140 503.8 319 77.7
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.4e-140 503.4 358 72.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.4e-140 503.4 351 72.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.1e-140 502.3 332 75.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 5.3e-140 501.5 335 73.4
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 7.0e-140 501.1 362 70.7
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 9.1e-140 500.7 332 75.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 9.1e-140 500.7 354 70.9
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 9.1e-140 500.7 358 71.2
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.0e-139 499.6 343 72.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.5e-139 498.4 351 70.1
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 7.7e-139 497.7 352 71.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.0e-138 497.3 350 70.6
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.0e-138 497.3 328 74.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.9e-138 495.7 337 72.7
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.9e-138 495.7 351 70.4
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.8e-138 495.4 362 70.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 5.0e-138 495.0 353 70.0
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 6.5e-138 494.6 313 78.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.5e-137 493.4 353 69.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-137 493.0 353 69.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 5.5e-137 491.5 324 73.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 9.4e-137 490.7 359 69.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-136 490.3 334 73.1
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.8e-135 486.5 338 73.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.3e-135 486.1 351 70.4
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.3e-135 486.1 336 73.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.2e-134 483.8 359 67.4
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-132 476.5 352 68.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 9.1e-132 474.2 341 70.7
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.7e-131 472.6 328 72.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.2e-130 469.5 306 77.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 5.0e-130 468.4 327 71.3
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.5e-129 464.9 305 74.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 9.4e-129 464.2 311 74.0
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.7e-128 462.6 406 61.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.7e-128 462.6 351 67.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.0e-127 460.7 326 70.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.8e-127 458.0 327 71.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 6.8e-127 458.0 334 68.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 3.4e-126 455.7 325 69.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-125 453.8 347 67.1
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.4e-124 450.3 316 71.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.0e-123 446.4 357 64.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.0e-123 446.4 265 82.6
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 4.5e-123 445.3 537 48.4
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.3e-122 443.7 328 67.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 6.8e-119 431.4 334 67.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-112 410.2 278 74.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.4e-111 407.1 265 77.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.2e-108 396.0 351 59.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 5.4e-108 395.2 289 71.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 6.4e-101 371.7 285 67.7
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.6e-99 367.1 242 73.6
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.7e-98 363.6 351 52.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.6e-96 357.1 325 57.8
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.1e-96 354.8 206 84.5
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.4e-94 349.0 232 74.6
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-92 344.4 349 55.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.6e-89 332.0 210 78.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 8.9e-87 324.7 288 56.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.8e-85 319.3 208 76.4
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.7e-83 313.2 207 75.4
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.0e-70 270.4 163 82.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.7e-69 267.3 189 70.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 6.4e-69 265.4 384 41.1
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.7e-64 249.6 172 72.1
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.2e-64 248.8 212 62.3
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.3e-63 245.7 161 73.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.5e-60 235.7 161 72.0
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.8e-56 223.4 186 64.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 9.3e-52 208.4 119 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 7.9e-51 205.3 253 47.4
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 6.3e-48 195.7 340 39.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.7e-45 187.6 193 53.9
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.9e-38 162.5 112 75.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.6e-30 137.9 126 54.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.8e-26 122.1 266 34.6
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.7e-24 117.9 254 33.5
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 6.3e-24 115.9 71 81.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.8e-23 114.4 334 31.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.7e-22 109.0 206 35.9
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.1e-20 105.1 91 58.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 5.5e-20 102.8 63 74.6
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 6.1e-19 99.4 72 68.1
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.3e-16 89.4 56 80.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.4e-15 87.4 57 73.7
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.0e-13 79.7 50 72.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 9.8e-09 65.5 110 38.2
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 2.7e-06 57.4 57 47.4
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 3.5e-06 57.0 35 68.6


User provided reference genes

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