Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.6e-164 582.0 305 100.0
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 4.3e-90 335.5 294 62.9
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 7.3e-90 334.7 286 62.6
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 2.1e-89 333.2 283 63.6
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 7.6e-87 324.7 287 63.1
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.4e-85 320.5 287 61.3
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.2e-85 317.8 283 60.4
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 9.2e-85 317.8 285 61.4
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.1e-84 316.6 283 60.4
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 3.5e-84 315.8 283 60.4
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.3e-83 313.2 287 62.0
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 6.6e-83 311.6 293 61.1
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.3e-82 309.3 286 60.1
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.1e-81 306.6 283 59.4
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.1e-80 304.3 267 62.2
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.8e-80 303.5 287 61.3
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.5e-79 300.4 275 60.4
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 2.2e-78 296.6 269 60.6
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 6.4e-78 295.0 276 58.7
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 3.3e-74 282.7 266 61.3
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 4.3e-74 282.3 268 59.7
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 5.6e-74 282.0 267 59.2
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 7.3e-74 281.6 274 55.1
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 9.6e-74 281.2 286 56.6
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.6e-73 280.4 305 53.4
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.1e-73 280.0 267 58.8
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.1e-73 280.0 305 53.4
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.8e-73 278.9 305 53.1
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.1e-73 278.1 305 52.8
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.9e-72 275.0 298 51.7
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 3.4e-71 272.7 270 57.8
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 5.8e-71 271.9 322 50.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.7e-70 270.4 276 54.3
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.7e-70 270.4 268 58.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.9e-70 269.6 274 56.2
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 6.4e-70 268.5 296 52.7
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 5.4e-69 265.4 293 50.2
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 3.5e-68 262.7 279 54.1
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 3.0e-67 259.6 273 51.6
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 5.1e-67 258.8 282 54.3
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 7.4e-66 255.0 277 53.8
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-65 254.2 293 51.2
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 2.1e-65 253.4 264 52.7
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.8e-65 253.1 245 57.1
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.8e-65 253.1 275 52.4
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.1e-64 251.1 278 50.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 4.5e-63 245.7 207 66.2
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 7.6e-63 245.0 271 53.5
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.7e-62 243.8 293 49.8
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.9e-62 243.0 293 50.2
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 2.9e-62 243.0 270 54.8
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 4.9e-62 242.3 297 48.8
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 4.9e-62 242.3 217 61.8
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-61 241.1 225 61.8
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.1e-61 241.1 291 51.2
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.1e-61 238.4 310 46.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.1e-60 236.9 297 50.2
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.7e-60 236.5 284 51.1
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.0e-59 234.6 280 49.3
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.8e-59 233.8 292 50.3
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.3e-59 233.4 297 46.5
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 3.9e-59 232.6 284 48.6
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 3.9e-59 232.6 275 50.2
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 5.1e-59 232.3 275 50.2
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 5.1e-59 232.3 271 51.3
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 8.7e-59 231.5 291 47.4
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.3e-57 227.6 292 47.3
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 2.1e-57 226.9 268 51.9
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.7e-57 226.1 267 46.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 4.0e-56 222.6 280 50.0
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 1.2e-55 221.1 251 53.4
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 3.4e-55 219.5 290 46.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 3.4e-55 219.5 252 52.0
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.0e-54 218.0 219 58.9
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.9e-54 216.5 231 52.4
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.9e-54 215.7 304 46.1
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 8.4e-54 214.9 271 48.3
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.1e-53 214.5 257 51.0
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.1e-53 214.5 278 49.6
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.4e-53 214.2 242 52.9
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.5e-53 213.4 242 49.2
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 9.3e-53 211.5 313 45.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 3.5e-52 209.5 290 43.1
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 4.6e-52 209.1 277 48.4
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 2.3e-51 206.8 272 47.1
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 2.3e-51 206.8 280 47.9
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.3e-51 206.8 327 43.4
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 5.1e-51 205.7 235 52.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.3e-49 201.1 271 45.8
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.6e-49 200.7 272 45.6
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.7e-49 199.5 279 45.9
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.1e-48 198.0 200 54.0
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 4.1e-48 196.1 299 43.5
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 9.0e-48 194.9 231 53.7
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.0e-47 193.7 271 42.1
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 5.0e-46 189.1 299 43.5
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 1.4e-45 187.6 207 55.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.9e-45 187.2 248 42.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 2.5e-45 186.8 273 40.7
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 7.2e-45 185.3 223 50.7
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 2.1e-44 183.7 273 44.7
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 9.7e-42 174.9 291 41.2
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 6.9e-40 168.7 236 47.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.2e-39 167.9 284 40.8
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 3.8e-38 162.9 243 44.4
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.1e-36 157.1 231 45.9
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.7e-36 156.8 147 59.9
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 7.9e-36 155.2 292 38.7
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 2.0e-31 140.6 293 37.2
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.1e-29 134.8 215 39.1
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.9e-29 134.0 127 59.1
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 5.2e-27 125.9 128 50.0
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.1e-26 124.8 150 46.7
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 4.8e-25 119.4 337 31.8
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-23 114.8 135 52.6
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 4.5e-23 112.8 179 43.0
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.5e-23 112.8 103 60.2
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 3.8e-22 109.8 98 56.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.0e-22 109.4 272 35.3
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.6e-20 104.4 81 74.1
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.3e-17 94.7 132 42.4
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-16 90.5 68 75.0
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.0e-15 87.4 70 58.6
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.0e-14 85.1 97 46.4
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.8e-14 83.2 69 53.6
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 3.8e-14 83.2 75 56.0
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 9.4e-13 78.6 107 41.1
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 1.2e-12 78.2 81 56.8
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.1e-12 75.9 72 54.2
BcaB08g36158 Brassica carinata HOM05D005648 ORTHO05D039826 2.9e-06 57.0 124 33.9
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 3.8e-06 56.6 60 63.3


User provided reference genes

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