Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-118 429.1 212 100.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 8.7e-90 334.0 210 77.6
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 6.2e-88 327.8 210 75.2
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.1e-87 327.0 211 75.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.8e-87 326.2 210 74.3
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-86 322.8 210 74.3
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.0e-86 322.8 210 74.3
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.6e-86 320.9 210 73.8
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 3.5e-83 312.0 210 73.3
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 4.6e-83 311.6 210 73.8
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.3e-82 309.3 210 73.8
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.5e-81 305.8 212 72.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 4.3e-81 305.1 215 71.2
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.6e-80 303.1 212 72.6
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.6e-80 302.0 210 72.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 6.2e-80 301.2 212 71.7
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.2e-80 301.2 210 70.5
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.1e-79 300.4 212 70.8
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.4e-79 300.1 212 71.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.5e-78 296.6 207 70.0
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 5.8e-78 294.7 210 71.0
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 7.6e-78 294.3 211 69.7
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.7e-77 293.1 212 72.2
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 2.2e-77 292.7 210 70.0
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 3.8e-77 292.0 210 69.0
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 4.9e-77 291.6 210 69.0
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 8.4e-77 290.8 211 67.8
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 8.4e-77 290.8 212 69.3
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.4e-76 290.0 210 68.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.4e-76 289.3 210 69.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.2e-76 288.9 212 68.4
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 9.3e-76 287.3 210 68.6
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 9.3e-76 287.3 210 69.0
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.2e-75 287.0 209 69.4
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.2e-75 287.0 210 67.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.2e-75 287.0 210 68.6
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.2e-75 287.0 204 70.1
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.1e-75 286.2 210 68.6
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 2.7e-75 285.8 210 70.0
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 3.5e-75 285.4 210 69.0
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.5e-75 285.4 206 69.9
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.0e-74 283.9 209 68.4
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.8e-74 283.1 210 65.2
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 5.1e-74 281.6 212 68.4
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 8.7e-74 280.8 210 68.1
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-73 280.0 210 68.1
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.5e-73 280.0 211 67.3
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.5e-73 280.0 211 67.3
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.5e-73 279.3 210 65.7
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 2.5e-73 279.3 210 66.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 4.3e-73 278.5 210 67.6
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 5.6e-73 278.1 216 65.7
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.6e-73 278.1 210 65.7
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 2.1e-72 276.2 212 67.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 8.1e-72 274.2 210 66.2
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.1e-71 273.9 210 66.7
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.8e-71 273.1 210 67.6
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.8e-71 273.1 210 63.3
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.4e-71 272.7 209 67.0
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 4.0e-71 271.9 228 63.2
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.0e-71 271.9 213 65.7
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.9e-71 271.2 210 64.8
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.2e-70 270.4 210 66.2
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.2e-70 270.4 210 66.2
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 2.0e-70 269.6 211 60.7
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 7.6e-70 267.7 210 61.4
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 7.6e-70 267.7 216 64.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.0e-69 267.3 210 65.2
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.0e-69 267.3 210 65.7
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.2e-69 266.2 160 79.4
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.9e-69 265.8 210 65.2
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.9e-69 265.8 211 63.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 4.9e-69 265.0 205 64.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 6.5e-69 264.6 225 63.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 6.5e-69 264.6 211 63.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.1e-68 263.8 210 62.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.4e-68 263.5 205 65.4
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.5e-68 262.7 211 62.1
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.6e-67 258.5 205 61.5
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 7.9e-67 257.7 216 61.1
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.0e-66 257.3 211 60.2
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 3.0e-66 255.8 238 55.0
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.9e-66 255.4 164 73.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-65 253.8 186 66.1
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 7.4e-65 251.1 211 61.6
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.1e-63 245.7 209 59.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.1e-63 245.4 184 65.8
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 4.1e-63 245.4 212 60.8
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-62 243.8 208 59.1
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.4e-62 242.3 211 56.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.5e-62 241.9 211 57.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 7.6e-62 241.1 211 57.8
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 3.8e-61 238.8 210 60.5
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 6.5e-61 238.0 211 59.7
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.1e-60 237.3 164 68.3
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.5e-60 236.1 204 58.8
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.6e-59 233.4 213 56.3
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.6e-59 233.4 211 59.2
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.6e-59 233.4 207 56.5
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.1e-59 233.0 214 59.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.7e-59 232.6 210 59.0
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.6e-59 231.9 213 55.9
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.3e-58 230.3 157 68.2
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.3e-58 229.6 201 57.7
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.9e-58 228.8 212 57.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.6e-56 223.4 208 57.2
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.4e-55 220.3 205 56.1
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 6.9e-55 218.0 163 65.0
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.6e-54 216.1 198 59.1
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 5.9e-54 214.9 213 52.6
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.9e-52 209.9 153 64.7
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.4e-47 193.7 187 52.9
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.2e-45 186.4 170 57.6
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.9e-44 183.3 211 48.3
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.0e-37 158.7 211 45.5
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.6e-35 152.5 116 62.9
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.4e-34 150.6 218 41.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 5.2e-34 148.7 150 52.0
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.6e-33 146.4 146 51.4
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 2.4e-31 139.8 158 47.5
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.0e-30 136.7 211 38.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.1e-28 131.0 175 45.7
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.4e-25 119.4 120 54.2
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.1e-20 104.4 140 41.4
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.5e-20 103.2 68 72.1
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 6.1e-19 98.6 182 37.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 9.2e-15 84.7 132 38.6
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.7e-14 81.6 125 41.6
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 6.8e-10 68.6 46 71.7
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.2e-09 67.8 45 68.9
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 1.5e-09 67.4 45 66.7
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.4e-09 66.2 149 28.2
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 4.4e-09 65.9 113 37.2
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.7e-08 63.9 76 47.4


User provided reference genes

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