Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-176 622.9 460 100.0
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 3.8e-98 362.8 459 61.2
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.7e-96 356.7 459 61.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.3e-94 349.4 273 72.9
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.7e-93 346.3 450 58.9
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.8e-92 344.0 450 61.1
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.0e-92 342.8 450 60.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.6e-91 340.1 454 61.9
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 4.5e-91 339.3 277 72.2
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 7.6e-91 338.6 461 65.3
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.9e-90 336.7 273 70.0
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.9e-90 336.7 451 61.4
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.8e-90 336.3 452 60.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 8.4e-90 335.1 273 70.0
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 7.1e-89 332.0 273 70.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.6e-88 330.9 275 69.1
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.6e-88 330.9 275 69.8
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.6e-88 329.3 273 68.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.3e-87 327.8 463 68.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 3.0e-87 326.6 460 65.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.9e-87 326.2 273 69.6
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.3e-86 322.8 273 70.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 9.7e-86 321.6 271 64.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.3e-85 321.2 273 70.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.7e-85 319.7 279 68.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 4.8e-85 319.3 471 62.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.3e-85 318.9 452 64.2
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 6.3e-85 318.9 460 63.5
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.1e-84 318.2 257 71.2
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.1e-84 316.2 261 67.8
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.2e-83 314.7 282 67.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.5e-83 314.3 455 62.6
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.0e-83 313.9 257 70.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.6e-83 313.5 259 68.3
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 4.5e-83 312.8 450 63.1
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 4.5e-83 312.8 262 69.8
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 7.6e-83 312.0 271 67.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 7.6e-83 312.0 261 70.9
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.0e-82 311.6 276 67.8
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.4e-81 307.8 275 66.2
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.9e-81 307.4 273 63.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.5e-81 307.0 457 63.5
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 5.5e-81 305.8 472 61.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.2e-80 304.7 462 62.8
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.7e-80 303.5 477 57.4
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 4.6e-80 302.8 266 69.9
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 6.1e-80 302.4 276 59.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.3e-79 301.2 267 68.9
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 3.0e-79 300.1 460 51.1
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.1e-79 299.3 261 68.6
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 3.3e-78 296.6 255 69.8
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 4.3e-78 296.2 454 67.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.4e-78 295.4 248 70.6
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 9.7e-78 295.0 495 56.4
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 3.7e-77 293.1 483 56.1
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.8e-77 292.7 191 77.0
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.1e-76 290.0 281 63.7
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 5.3e-76 289.3 191 75.9
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 1.5e-75 287.7 268 64.2
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.5e-75 287.7 452 66.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.9e-75 285.8 191 74.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 7.7e-75 285.4 251 69.7
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.7e-74 284.3 456 63.4
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.7e-74 284.3 256 66.0
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.8e-74 283.1 266 63.9
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.5e-73 280.4 480 57.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.2e-72 278.1 281 62.6
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 7.9e-72 275.4 273 57.1
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 7.9e-72 275.4 458 64.2
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.4e-71 274.6 239 65.7
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.8e-71 274.2 238 65.1
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.0e-71 273.5 262 63.7
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 6.7e-71 272.3 266 61.7
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 4.4e-70 269.6 216 69.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 2.8e-69 266.9 218 67.9
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.1e-68 263.5 459 59.7
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 5.3e-68 262.7 218 64.2
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.2e-67 261.5 266 61.7
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.5e-67 261.2 247 65.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.9e-67 259.2 469 51.2
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.9e-67 259.2 281 59.4
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 5.9e-67 259.2 194 71.6
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 7.7e-67 258.8 191 69.1
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.3e-66 258.1 263 59.3
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.7e-66 257.7 245 60.8
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.8e-66 256.5 235 63.0
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.5e-65 253.8 234 65.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 7.2e-65 252.3 456 48.5
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 7.2e-65 252.3 162 77.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 2.1e-64 250.8 277 54.5
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.1e-64 250.8 172 70.3
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.0e-63 248.4 266 54.9
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.3e-63 247.3 245 63.3
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.6e-62 243.8 266 58.3
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.6e-62 243.8 281 55.9
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.3e-62 243.4 275 56.7
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 4.4e-62 243.0 459 51.9
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 3.7e-61 240.0 163 68.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.8e-60 237.7 177 69.5
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 4.1e-60 236.5 160 70.6
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.3e-60 236.1 160 70.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 9.1e-60 235.3 160 70.0
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 9.1e-60 235.3 160 70.0
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.6e-59 233.8 160 69.4
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.6e-59 233.8 160 69.4
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 4.5e-59 233.0 176 64.8
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.9e-59 232.6 176 66.5
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.3e-58 231.5 469 53.5
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 5.5e-57 226.1 279 55.6
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.7e-56 223.0 190 63.7
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.2e-53 214.2 252 52.4
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 6.3e-53 212.6 286 52.1
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.4e-52 210.7 265 48.7
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.7e-51 207.2 193 60.1
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.9e-51 206.1 118 83.1
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 5.9e-51 206.1 165 64.8
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.0e-47 193.7 167 61.7
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.3e-45 188.3 160 60.6
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 4.1e-44 183.3 155 59.4
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.8e-42 176.8 177 55.4
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 4.2e-41 173.3 151 56.3
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.6e-40 170.2 147 57.1
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.0e-39 168.7 253 43.9
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.3e-39 167.5 103 78.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.7e-37 161.4 199 55.3
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.1e-36 158.7 266 46.6
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 7.0e-36 156.0 164 49.4
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 4.0e-31 140.2 86 80.2
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.4e-22 110.5 88 61.4
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.3e-21 108.6 154 43.5
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.0e-18 99.0 146 58.2
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.0e-18 97.4 63 69.8
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 8.1e-16 89.4 331 50.5
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 4.0e-15 87.0 122 60.7


User provided reference genes

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