Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.0e-193 679.9 343 100.0
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 8.5e-95 351.3 278 64.0
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.4e-94 350.5 284 64.1
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 3.6e-93 345.9 282 62.8
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 3.6e-93 345.9 297 62.0
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.0e-92 344.4 282 65.6
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 1.4e-92 344.0 282 63.8
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.8e-92 343.6 290 63.1
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 3.3e-91 339.3 239 71.5
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.4e-91 339.0 279 64.2
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 5.7e-91 338.6 282 63.5
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.2e-90 336.7 287 60.6
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 6.3e-90 335.1 279 62.7
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.1e-89 334.3 303 59.1
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 4.1e-89 332.4 277 62.5
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 5.3e-89 332.0 286 62.9
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 5.3e-89 332.0 279 61.3
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 7.0e-89 331.6 284 61.6
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.5e-88 330.5 284 61.3
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.5e-88 330.5 266 63.5
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.0e-88 330.1 277 62.1
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 3.5e-88 329.3 238 68.9
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 3.5e-88 329.3 277 62.8
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.5e-88 329.3 277 63.2
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.5e-88 329.3 277 62.8
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.5e-88 328.9 286 62.2
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 5.9e-88 328.6 269 62.8
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 1.0e-87 327.8 288 61.8
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-87 327.8 277 62.5
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.3e-87 327.4 282 62.1
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.3e-87 327.4 282 62.1
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.7e-87 327.0 252 65.5
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 2.2e-87 326.6 279 59.5
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 5.0e-87 325.5 263 64.3
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 8.5e-87 324.7 264 63.3
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.1e-86 324.3 263 63.9
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.1e-86 324.3 301 57.5
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 1.4e-86 323.9 262 63.7
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 1.4e-86 323.9 262 63.7
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 1.4e-86 323.9 262 63.7
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.5e-86 323.2 277 61.7
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.5e-86 323.2 236 67.4
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 4.2e-86 322.4 273 61.2
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 9.4e-86 321.2 271 63.8
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 1.2e-85 320.9 273 60.8
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-85 320.5 279 61.3
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.1e-85 318.5 262 62.6
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.4e-84 317.4 275 59.6
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 2.3e-84 316.6 333 52.9
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 5.2e-84 315.5 293 56.3
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.0e-83 313.5 281 59.8
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 2.6e-83 313.2 264 60.2
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 3.3e-83 312.8 275 58.5
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 5.7e-83 312.0 227 69.2
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 9.7e-83 311.2 268 60.4
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 2.2e-82 310.1 285 57.2
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 6.3e-82 308.5 296 55.7
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 9.1e-81 304.7 239 64.4
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 1.6e-80 303.9 280 59.6
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 2.0e-80 303.5 289 57.1
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 5.9e-80 302.0 276 60.1
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.3e-79 300.8 281 58.0
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.2e-79 300.1 305 54.4
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 5.0e-79 298.9 236 62.3
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.1e-78 297.7 290 52.8
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.5e-78 297.4 238 63.0
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.5e-78 297.4 249 59.0
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.9e-78 297.0 253 60.9
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.6e-77 293.9 239 61.5
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 2.1e-77 293.5 278 56.1
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 4.7e-77 292.4 238 60.5
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 6.1e-77 292.0 239 60.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.4e-76 290.8 238 61.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.8e-76 290.4 265 57.4
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 5.2e-76 288.9 238 61.3
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 6.8e-76 288.5 284 53.9
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 1.2e-75 287.7 245 60.8
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 2.0e-75 287.0 284 53.9
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 7.5e-75 285.0 239 59.4
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 7.5e-75 285.0 285 56.1
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 4.8e-74 282.3 239 59.8
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 6.3e-74 282.0 284 53.5
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 7.0e-73 278.5 219 66.7
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.7e-72 276.6 261 55.9
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.0e-71 274.6 267 52.8
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.0e-71 274.6 272 54.4
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 2.2e-71 273.5 255 56.9
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.8e-71 272.7 294 52.4
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 5.0e-71 272.3 267 53.6
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 8.5e-71 271.6 254 55.5
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.2e-69 267.7 231 57.1
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.0e-68 263.1 213 62.9
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 4.4e-67 259.2 237 53.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 2.7e-64 250.0 232 53.4
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.7e-63 247.3 196 61.2
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.7e-63 247.3 269 52.0
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 3.8e-63 246.1 175 65.7
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 3.6e-61 239.6 236 52.5
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.0e-60 238.0 295 47.8
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 5.4e-57 225.7 275 46.9
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 9.2e-57 224.9 361 38.5
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.3e-54 216.1 259 49.0
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 3.6e-53 213.0 255 49.0
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 4.0e-44 183.0 189 50.8
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.6e-43 180.3 272 39.3
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 6.0e-40 169.1 236 43.2
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 6.6e-39 165.6 243 39.5
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.3e-34 151.4 144 60.4
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 4.1e-33 146.4 101 62.4
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 4.1e-33 146.4 101 62.4
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 2.3e-31 140.6 284 32.7
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-29 134.4 168 47.6
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-29 134.0 168 48.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 6.8e-28 129.0 240 36.7
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.2e-26 124.0 145 49.7
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.8e-26 123.2 93 71.0
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 8.4e-26 122.1 74 82.4
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.1e-25 121.7 236 35.6
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.4e-20 104.8 154 42.2
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 2.0e-19 100.9 235 31.9
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.9e-17 94.4 260 28.8
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.5e-16 90.1 106 47.2
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 3.5e-16 90.1 246 30.1
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 1.7e-15 87.8 76 61.8
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 5.6e-14 82.8 136 38.2
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.3e-10 71.6 44 72.7
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.7e-10 71.2 69 59.4
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.9e-09 67.8 58 60.3
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 2.4e-09 67.4 66 56.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 7.1e-09 65.9 42 73.8


User provided reference genes

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