Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1052.1 Carica papaya HOM05D000929 ORTHO05D004813 4.0e-99 364.8 187 100.0
QL12p003602 Quercus lobata HOM05D000929 ORTHO05D004813 8.8e-54 214.2 193 63.7
QL93p0143_0032 Quercus lobata HOM05D000929 ORTHO05D004813 8.8e-54 214.2 193 63.7
Dinv37432 Davidia involucrata HOM05D000929 ORTHO05D004813 1.5e-53 213.4 195 57.9
Dinv41800 Davidia involucrata HOM05D000929 ORTHO05D004813 4.4e-53 211.8 195 57.9
Actinidia32793 Actinidia chinensis HOM05D000929 ORTHO05D004813 2.7e-50 202.6 193 57.5
Actinidia01247 Actinidia chinensis HOM05D000929 ORTHO05D004813 1.1e-48 197.2 193 59.1
TWI60G0350 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 1.5e-48 196.8 194 56.2
Potri.004G235200 Populus trichocarpa HOM05D000929 ORTHO05D004813 2.5e-48 196.1 192 56.8
Rhsim11G0037600 Rhododendron simsii HOM05D000929 ORTHO05D004813 4.2e-48 195.3 192 57.8
vmacro00098 Vaccinium macrocarpon HOM05D000929 ORTHO05D004813 1.6e-47 193.4 194 55.7
TWI32G0464 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 3.6e-47 192.2 194 56.2
Ciclev10010995m.g Citrus clementina HOM05D000929 ORTHO05D004813 1.8e-46 189.9 194 54.1
COL.COLO4_16747 Corchorus olitorius HOM05D000929 ORTHO05D004813 2.3e-46 189.5 190 56.8
Haze_08424 Corylus avellana HOM05D000929 ORTHO05D004813 2.3e-46 189.5 195 56.9
Thecc.03G320400 Theobroma cacao HOM05D000929 ORTHO05D004813 3.0e-46 189.1 187 58.8
CiPaw.11G074100 Carya illinoinensis HOM05D000929 ORTHO05D004813 1.5e-45 186.8 194 56.2
Manes.17G001200 Manihot esculenta HOM05D000929 ORTHO05D004813 5.7e-45 184.9 194 54.6
Duzib205G0211 Durio zibethinus HOM05D000929 ORTHO05D004813 2.2e-44 183.0 189 55.6
Cfa012306 Carpinus fangiana HOM05D000929 ORTHO05D004813 8.3e-44 181.0 193 56.0
Glyma.16G076500 Glycine max HOM05D000929 ORTHO05D004813 8.3e-44 181.0 194 55.2
Gohir.A08G148700 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.1e-43 180.6 191 55.0
Hma1.2p1_0262F.1_g105380 Hydrangea macrophylla HOM05D000929 ORTHO05D004813 2.4e-43 179.5 190 55.8
Hma1.2p1_1991F.1_g310190 Hydrangea macrophylla HOM05D000929 ORTHO05D004813 3.1e-43 179.1 190 54.2
Duzib068G0752 Durio zibethinus HOM05D000929 ORTHO05D004813 4.1e-43 178.7 189 52.9
Oeu023055.1 Olea europaea HOM05D000929 ORTHO05D004813 5.4e-43 178.3 195 53.8
MD07G1052000 Malus domestica HOM05D000929 ORTHO05D004813 9.1e-43 177.6 194 53.1
Lalb_Chr16g0391781 Lupinus albus HOM05D000929 ORTHO05D004813 2.0e-42 176.4 195 53.3
Glyma.16G109200 Glycine max HOM05D000929 ORTHO05D004813 4.5e-42 175.3 194 54.1
Gorai.004G177000 Gossypium raimondii HOM05D000929 ORTHO05D004813 4.5e-42 175.3 191 54.5
Eucgr.E01151 Eucalyptus grandis HOM05D000929 ORTHO05D004813 5.9e-42 174.9 194 53.6
Glyma.01G153200 Glycine max HOM05D000929 ORTHO05D004813 7.7e-42 174.5 189 55.6
Gorai.008G218700 Gossypium raimondii HOM05D000929 ORTHO05D004813 2.3e-41 172.9 190 53.2
Gohir.D12G203900 Gossypium hirsutum HOM05D000929 ORTHO05D004813 3.8e-41 172.2 190 53.2
TAR362G0882 Trochodendron aralioides HOM05D000929 ORTHO05D004813 3.8e-41 172.2 195 51.8
Cc08_g05960 Coffea canephora HOM05D000929 ORTHO05D004813 8.6e-41 171.0 195 52.3
Gohir.D08G169800 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.5e-40 170.2 191 52.9
Phvul.002G122300 Phaseolus vulgaris HOM05D000929 ORTHO05D004813 9.5e-40 167.5 189 53.4
Glyma.09G218500 Glycine max HOM05D000929 ORTHO05D004813 1.2e-39 167.2 190 54.2
Prupe.2G056200 Prunus persica HOM05D000929 ORTHO05D004813 3.6e-39 165.6 194 51.0
Prupe.2G055800 Prunus persica HOM05D000929 ORTHO05D004813 4.7e-39 165.2 194 52.1
VMungo1215G3448 Vigna mungo HOM05D000929 ORTHO05D004813 6.1e-39 164.9 189 52.4
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 8.0e-39 164.5 179 52.5
Prupe.2G018400 Prunus persica HOM05D000929 ORTHO05D004813 1.0e-38 164.1 194 50.5
CAN.G998.9 Capsicum annuum HOM05D000929 ORTHO05D004813 1.4e-38 163.7 193 49.2
Nitab4.5_0000986g0030 Nicotiana tabacum HOM05D000929 ORTHO05D004813 2.3e-38 162.9 192 52.6
Lj4g0001871 Lotus japonicus HOM05D000929 ORTHO05D004813 4.0e-38 162.2 194 50.0
Nn1g08153 Nelumbo nucifera HOM05D000929 ORTHO05D004813 4.0e-38 162.2 196 50.0
Nitab4.5_0007507g0010 Nicotiana tabacum HOM05D000929 ORTHO05D004813 4.0e-38 162.2 192 52.1
RcHm_v2.0_Chr7g0215311 Rosa chinensis HOM05D000929 ORTHO05D004813 5.2e-38 161.8 194 50.5
FAN08G3498 Fragaria x ananassa HOM05D000929 ORTHO05D004813 6.8e-38 161.4 189 50.8
FAN13G0018 Fragaria x ananassa HOM05D000929 ORTHO05D004813 6.8e-38 161.4 189 50.3
ClCG11G016100 Citrullus lanatus HOM05D000929 ORTHO05D004813 8.9e-38 161.0 194 51.5
Sopen08g023910 Solanum pennellii HOM05D000929 ORTHO05D004813 8.9e-38 161.0 193 48.7
DCAR_004536 Daucus carota HOM05D000929 ORTHO05D004813 1.2e-37 160.6 190 49.5
FAN04G0569 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.5e-37 160.2 189 49.7
Peaxi162Scf00053g00316 Petunia axillaris HOM05D000929 ORTHO05D004813 1.5e-37 160.2 195 49.2
FvH4_5g25110 Fragaria vesca HOM05D000929 ORTHO05D004813 2.0e-37 159.8 189 50.3
FAN18G2918 Fragaria x ananassa HOM05D000929 ORTHO05D004813 2.0e-37 159.8 189 50.3
Lalb_Chr05g0215171 Lupinus albus HOM05D000929 ORTHO05D004813 5.7e-37 158.3 194 53.1
MD02G1267100 Malus domestica HOM05D000929 ORTHO05D004813 5.7e-37 158.3 192 51.0
Solyc08g075310.4 Solanum lycopersicum HOM05D000929 ORTHO05D004813 5.7e-37 158.3 193 47.7
PGSC0003DMG400001953 Solanum tuberosum HOM05D000929 ORTHO05D004813 5.7e-37 158.3 193 47.2
Sed0024593 Sechium edule HOM05D000929 ORTHO05D004813 7.5e-37 157.9 192 47.4
Sed0019322 Sechium edule HOM05D000929 ORTHO05D004813 3.7e-36 155.6 195 48.2
MELO3C010526.2 Cucumis melo HOM05D000929 ORTHO05D004813 4.9e-36 155.2 194 49.5
CANSAT35G1067 Cannabis sativa HOM05D000929 ORTHO05D004813 6.4e-36 154.8 190 50.5
Oeu023056.3 Olea europaea HOM05D000929 ORTHO05D004813 6.4e-36 154.8 156 57.1
arahy.Tifrunner.gnm1.ann1.C95Z0S Arachis hypogaea HOM05D000929 ORTHO05D004813 1.1e-35 154.1 190 51.1
arahy.Tifrunner.gnm1.ann1.HVM0CV Arachis hypogaea HOM05D000929 ORTHO05D004813 1.1e-35 154.1 190 51.1
CsaV3_4G014930 Cucumis sativus L. HOM05D000929 ORTHO05D004813 2.4e-35 152.9 194 48.5
TPR.G14264 Trifolium pratense HOM05D000929 ORTHO05D004813 7.0e-35 151.4 195 51.8
Medtr8g072250 Medicago truncatula HOM05D000929 ORTHO05D004813 1.2e-34 150.6 190 48.9
Ca_22458_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004813 7.8e-34 147.9 193 49.7
Lalb_Chr09g0325031 Lupinus albus HOM05D000929 ORTHO05D004813 1.0e-33 147.5 194 50.0
Aa31LG9G15770 Aethionema arabicum HOM05D000929 ORTHO05D004813 1.3e-33 147.1 188 48.4
PGR031G1573 Punica granatum HOM05D000929 ORTHO05D004813 9.5e-32 141.0 196 45.9
PSO063G0460 Papaver somniferum HOM05D000929 ORTHO05D004813 4.7e-31 138.7 190 46.3
Lj8C361G1 Lonicera japonica HOM05D000929 ORTHO05D004813 1.0e-30 137.5 191 47.6
MSTRG.25749 Avicennia marina HOM05D000929 ORTHO05D004813 1.4e-30 137.1 190 48.9
PSO017G4228 Papaver somniferum HOM05D000929 ORTHO05D004813 3.1e-30 136.0 190 46.3
THA.LOC104798531 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 4.4e-29 132.1 190 47.9
TAR636G3540 Trochodendron aralioides HOM05D000929 ORTHO05D004813 7.5e-29 131.3 173 47.4
EL10Ac5g12482 Beta vulgaris HOM05D000929 ORTHO05D004813 1.7e-28 130.2 192 45.3
SalBow4G0955 Salvia bowleyana HOM05D000929 ORTHO05D004813 3.7e-28 129.0 191 45.5
CiPaw.12G055500 Carya illinoinensis HOM05D000929 ORTHO05D004813 8.3e-28 127.9 146 52.7
MSTRG.11858 Avicennia marina HOM05D000929 ORTHO05D004813 1.4e-27 127.1 189 44.4
AT1G31730 Arabidopsis thaliana HOM05D000929 ORTHO05D004813 1.9e-27 126.7 188 44.1
BcaC05g26656 Brassica carinata HOM05D000929 ORTHO05D004813 1.9e-27 126.7 189 44.4
Ah.02g115480 Amaranthus hybridus HOM05D000929 ORTHO05D004813 3.2e-27 125.9 192 44.8
BcaB07g32818 Brassica carinata HOM05D000929 ORTHO05D004813 4.1e-27 125.6 189 43.9
AUR62030759 Chenopodium quinoa HOM05D000929 ORTHO05D004813 4.1e-27 125.6 191 42.4
Gohir.A12G201100 Gossypium hirsutum HOM05D000929 ORTHO05D004813 4.1e-27 125.6 168 46.4
AL1G45800 Arabidopsis lyrata HOM05D000929 ORTHO05D004813 5.4e-27 125.2 188 44.1
Carub.0001s3003 Capsella rubella HOM05D000929 ORTHO05D004813 7.8e-26 121.3 155 47.7
Thhalv10006719m.g Eutrema salsugineum HOM05D000929 ORTHO05D004813 7.8e-26 121.3 154 48.1
BcaC05g27184 Brassica carinata HOM05D000929 ORTHO05D004813 1.0e-25 120.9 190 43.7
C05p30850 Brassica napus HOM05D000929 ORTHO05D004813 1.0e-25 120.9 190 43.7
BolC5t31815H Brassica oleracea HOM05D000929 ORTHO05D004813 1.0e-25 120.9 190 43.7
AUR62036405 Chenopodium quinoa HOM05D000929 ORTHO05D004813 1.3e-25 120.6 191 41.4
Sp1g27400 Schrenkiella parvula HOM05D000929 ORTHO05D004813 1.3e-25 120.6 155 45.8
Hund14936 Selenicereus undatus HOM05D000929 ORTHO05D004813 1.3e-25 120.6 192 41.7
A09p34650 Brassica napus HOM05D000929 ORTHO05D004813 3.0e-25 119.4 190 43.2
BraA09t38999Z Brassica rapa HOM05D000929 ORTHO05D004813 3.0e-25 119.4 190 43.2
CsaV3_UNG237520 Cucumis sativus L. HOM05D000929 ORTHO05D004813 3.6e-23 112.5 169 44.4
Sc22g0002840 Simmondsia chinensis HOM05D000929 ORTHO05D004813 6.2e-23 111.7 189 42.3
CDE02G1294 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 1.1e-22 110.9 198 39.4
HanXRQChr03g0084681 Helianthus annuus HOM05D000929 ORTHO05D004813 1.4e-22 110.5 190 40.5
HanXRQChr13g0412771 Helianthus annuus HOM05D000929 ORTHO05D004813 2.3e-22 109.8 193 40.9
Os01g0916200 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D004813 4.0e-22 109.0 190 41.1
Hund10896 Selenicereus undatus HOM05D000929 ORTHO05D004813 6.8e-22 108.2 186 41.9
Zm00001eb143480 Zea mays HOM05D000929 ORTHO05D004813 6.8e-22 108.2 192 38.0
BraA09t39452Z Brassica rapa HOM05D000929 ORTHO05D004813 8.9e-22 107.8 155 43.2
CDE06G0186 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 8.9e-22 107.8 192 39.1
THA.LOC104814388 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 8.9e-22 107.8 194 39.7
Aqoxy2G03914 Aquilegia oxysepala HOM05D000929 ORTHO05D004813 1.5e-21 107.1 136 43.4
A09p39530 Brassica napus HOM05D000929 ORTHO05D004813 1.5e-21 107.1 135 46.7
C05p24930 Brassica napus HOM05D000929 ORTHO05D004813 5.8e-21 105.1 135 45.9
SGA_v2.0_scaffold96G29109 Striga asiatica HOM05D000929 ORTHO05D004813 2.2e-20 103.2 148 45.3
BcaC05g26444 Brassica carinata HOM05D000929 ORTHO05D004813 2.9e-20 102.8 172 42.4
BolC5t31222H Brassica oleracea HOM05D000929 ORTHO05D004813 2.9e-20 102.8 172 42.4
ATR0069G035 Amborella trichopoda HOM05D000929 ORTHO05D004813 2.3e-17 93.2 195 38.5
Mapoly0011s0005 Marchantia polymorpha HOM05D000929 ORTHO05D004813 1.1e-16 90.9 214 38.3
Lsat_1_v5_gn_3_20441 Lactuca sativa HOM05D000929 ORTHO05D004813 1.9e-16 90.1 186 36.6
CARHR031030 Cardamine hirsuta HOM05D000929 ORTHO05D004813 4.3e-16 89.0 188 36.2
HPP92_006225 Vanilla planifolia HOM05D000929 ORTHO05D004813 2.8e-15 86.3 172 37.2
GSVIVG01036887001 Vitis vinifera HOM05D000929 ORTHO05D004813 4.4e-13 79.0 104 43.3
Lsat_1_v5_gn_6_77000 Lactuca sativa HOM05D000929 ORTHO05D004813 1.1e-11 74.3 118 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3572 Anthoceros agrestis HOM05D000929 ORTHO05D004813 2.7e-10 69.7 215 32.6
SHI32765 Sapria himalayana HOM05D000929 ORTHO05D004813 6.6e-09 65.1 137 38.7
Oeu046773.1 Olea europaea HOM05D000929 ORTHO05D004813 8.6e-09 64.7 122 36.1
Pp3c12_14810 Physcomitrium patens HOM05D000929 ORTHO05D004813 5.6e-08 62.0 218 31.2
Pp3c12_18560 Physcomitrium patens HOM05D000929 ORTHO05D004813 7.3e-08 61.6 221 30.3
Prupe.2G066700 Prunus persica HOM05D000929 ORTHO05D334731 2.4e-06 56.6 62 51.6
FvH4_5g19200 Fragaria vesca HOM05D000929 ORTHO05D004813 8.9e-06 54.7 144 30.6


User provided reference genes

Program Settings