Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc104.94 Carica papaya HOM05D001558 ORTHO05D005808 4.4e-89 331.3 168 100.0
COL.COLO4_29672 Corchorus olitorius HOM05D001558 ORTHO05D005808 5.9e-57 224.6 169 70.4
QL07p038153 Quercus lobata HOM05D001558 ORTHO05D005808 5.9e-57 224.6 169 69.2
Thecc.05G095300 Theobroma cacao HOM05D001558 ORTHO05D005808 2.5e-55 219.2 170 67.6
Haze_19651 Corylus avellana HOM05D001558 ORTHO05D005808 4.2e-55 218.4 170 69.4
TAR623G1089 Trochodendron aralioides HOM05D001558 ORTHO05D005808 4.2e-55 218.4 172 65.7
TWI74G0547 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 9.4e-55 217.2 170 68.2
CiPaw.10G012400 Carya illinoinensis HOM05D001558 ORTHO05D005808 1.6e-54 216.5 166 70.5
Potri.006G208900 Populus trichocarpa HOM05D001558 ORTHO05D005808 2.7e-54 215.7 177 66.7
Ciclev10011021m.g Citrus clementina HOM05D001558 ORTHO05D005808 1.0e-53 213.8 161 70.8
Manes.08G028400 Manihot esculenta HOM05D001558 ORTHO05D005808 1.0e-53 213.8 162 71.0
CANSAT64G1174 Cannabis sativa HOM05D001558 ORTHO05D005808 1.8e-53 213.0 157 72.0
GSVIVG01033891001 Vitis vinifera HOM05D001558 ORTHO05D005808 1.8e-53 213.0 156 70.5
Lalb_Chr20g0111601 Lupinus albus HOM05D001558 ORTHO05D005808 2.3e-53 212.6 168 63.7
Dinv21169 Davidia involucrata HOM05D001558 ORTHO05D005808 5.1e-53 211.5 172 65.7
Dinv31718 Davidia involucrata HOM05D001558 ORTHO05D005808 5.1e-53 211.5 167 66.5
Duzib106G1253 Durio zibethinus HOM05D001558 ORTHO05D005808 5.1e-53 211.5 162 68.5
Prupe.7G101600 Prunus persica HOM05D001558 ORTHO05D005808 6.7e-53 211.1 156 69.2
MD14G1031300 Malus domestica HOM05D001558 ORTHO05D005808 8.8e-53 210.7 156 67.9
Glyma.19G196000 Glycine max HOM05D001558 ORTHO05D005808 1.5e-52 209.9 170 64.7
CiPaw.09G017100 Carya illinoinensis HOM05D001558 ORTHO05D005808 2.0e-52 209.5 151 72.8
vmacro07436 Vaccinium macrocarpon HOM05D001558 ORTHO05D005808 2.5e-52 209.1 170 63.5
MD12G1030800 Malus domestica HOM05D001558 ORTHO05D005808 3.3e-52 208.8 156 67.3
Rhsim03G0070000 Rhododendron simsii HOM05D001558 ORTHO05D005808 3.3e-52 208.8 170 63.5
Phvul.001G192300 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 9.7e-52 207.2 162 64.8
Glyma.03G198100 Glycine max HOM05D001558 ORTHO05D005808 1.3e-51 206.8 170 62.9
Glyma.02G201300 Glycine max HOM05D001558 ORTHO05D005808 2.8e-51 205.7 166 64.5
CSS0019098 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 6.3e-51 204.5 174 63.8
ClCG04G010210 Citrullus lanatus HOM05D001558 ORTHO05D005808 1.1e-50 203.8 170 65.3
Gohir.A01G204700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 1.4e-50 203.4 170 64.7
PGSC0003DMG400008939 Solanum tuberosum HOM05D001558 ORTHO05D005808 1.4e-50 203.4 172 61.6
TAR369G0994 Trochodendron aralioides HOM05D001558 ORTHO05D005808 1.4e-50 203.4 162 65.4
Gohir.A11G318700 Gossypium hirsutum HOM05D001558 ORTHO05D005808 1.8e-50 203.0 170 65.3
Gohir.D01G194100 Gossypium hirsutum HOM05D001558 ORTHO05D005808 2.4e-50 202.6 170 64.1
Gohir.D11G337900 Gossypium hirsutum HOM05D001558 ORTHO05D005808 2.4e-50 202.6 170 64.1
Gorai.002G238200 Gossypium raimondii HOM05D001558 ORTHO05D005808 2.4e-50 202.6 170 64.1
MELO3C024563.2 Cucumis melo HOM05D001558 ORTHO05D005808 5.3e-50 201.4 168 63.7
RcHm_v2.0_Chr3g0474801 Rosa chinensis HOM05D001558 ORTHO05D005808 6.9e-50 201.1 154 67.5
Sabra16G0078200 Salix brachista HOM05D001558 ORTHO05D005808 6.9e-50 201.1 208 56.2
Solyc09g010180.3 Solanum lycopersicum HOM05D001558 ORTHO05D005808 6.9e-50 201.1 172 61.6
Sopen09g004920 Solanum pennellii HOM05D001558 ORTHO05D005808 6.9e-50 201.1 172 61.6
CsaV3_6G040850 Cucumis sativus L. HOM05D001558 ORTHO05D005808 9.1e-50 200.7 168 63.1
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 9.1e-50 200.7 166 60.8
Sed0010659 Sechium edule HOM05D001558 ORTHO05D005808 1.2e-49 200.3 169 65.7
AUR62006225 Chenopodium quinoa HOM05D001558 ORTHO05D005808 1.5e-49 199.9 158 66.5
Glyma.10G075300 Glycine max HOM05D001558 ORTHO05D005808 1.5e-49 199.9 166 63.9
Gorai.007G367900 Gossypium raimondii HOM05D001558 ORTHO05D005808 1.5e-49 199.9 170 63.5
Sabra06G0160700 Salix brachista HOM05D001558 ORTHO05D005808 3.4e-49 198.7 160 65.6
FvH4_6g19470 Fragaria vesca HOM05D001558 ORTHO05D005808 5.9e-49 198.0 154 68.2
Oeu007200.1 Olea europaea HOM05D001558 ORTHO05D005808 5.9e-49 198.0 168 61.3
Peaxi162Scf00069g00320 Petunia axillaris HOM05D001558 ORTHO05D005808 1.0e-48 197.2 174 62.1
TPR.G14787 Trifolium pratense HOM05D001558 ORTHO05D005808 1.0e-48 197.2 156 67.3
FAN05G0475 Fragaria x ananassa HOM05D001558 ORTHO05D005808 1.7e-48 196.4 154 68.2
FAN14G2159 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.2e-48 196.1 154 67.5
Psat6g080760 Pisum sativum HOM05D001558 ORTHO05D005808 2.2e-48 196.1 162 63.6
FAN05G1606 Fragaria x ananassa HOM05D001558 ORTHO05D005808 2.9e-48 195.7 154 67.5
Lj5g0025907 Lotus japonicus HOM05D001558 ORTHO05D005808 2.9e-48 195.7 166 63.3
TWI77G0440 Tripterygium wilfordii HOM05D001558 ORTHO05D005808 2.9e-48 195.7 123 79.7
Ca_24224_v3 Cicer arietinum L. HOM05D001558 ORTHO05D005808 3.8e-48 195.3 164 61.6
Sc20g0006410 Simmondsia chinensis HOM05D001558 ORTHO05D005808 3.8e-48 195.3 156 66.7
FAN09G3352 Fragaria x ananassa HOM05D001558 ORTHO05D005808 5.0e-48 194.9 154 66.9
Potri.016G075700 Populus trichocarpa HOM05D001558 ORTHO05D005808 6.5e-48 194.5 142 70.4
CAN.G397.87 Capsicum annuum HOM05D001558 ORTHO05D005808 1.1e-47 193.7 164 62.8
Nn6g34815 Nelumbo nucifera HOM05D001558 ORTHO05D005808 1.4e-47 193.4 141 70.2
Atru.chr8.1448 Acer truncatum HOM05D001558 ORTHO05D005808 1.9e-47 193.0 127 77.2
arahy.Tifrunner.gnm1.ann1.VDQ48T Arachis hypogaea HOM05D001558 ORTHO05D005808 1.9e-47 193.0 170 60.6
arahy.Tifrunner.gnm1.ann1.XHST8G Arachis hypogaea HOM05D001558 ORTHO05D005808 1.9e-47 193.0 170 60.6
Medtr1g059610 Medicago truncatula HOM05D001558 ORTHO05D005808 1.9e-47 193.0 166 62.7
CSS0036487 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D005808 7.2e-47 191.0 163 62.6
Phvul.007G153100 Phaseolus vulgaris HOM05D001558 ORTHO05D005808 2.1e-46 189.5 165 60.0
AT3G11540 Arabidopsis thaliana HOM05D001558 ORTHO05D005808 6.1e-46 188.0 145 66.2
Lalb_Chr25g0288211 Lupinus albus HOM05D001558 ORTHO05D005808 7.9e-46 187.6 149 63.8
Actinidia03911 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.4e-45 186.8 171 59.6
Actinidia04015 Actinidia chinensis HOM05D001558 ORTHO05D005808 1.4e-45 186.8 171 59.6
THA.LOC104809967 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 1.4e-45 186.8 143 65.0
Oeu047838.2 Olea europaea HOM05D001558 ORTHO05D005808 3.0e-45 185.7 163 60.1
BcaB06g25610 Brassica carinata HOM05D001558 ORTHO05D005808 5.1e-45 184.9 144 65.3
Thhalv10020017m.g Eutrema salsugineum HOM05D001558 ORTHO05D005808 6.7e-45 184.5 145 65.5
AL3G23090 Arabidopsis lyrata HOM05D001558 ORTHO05D005808 8.8e-45 184.1 145 64.8
A05p37790 Brassica napus HOM05D001558 ORTHO05D005808 8.8e-45 184.1 145 65.5
Aa31LG3G4940 Aethionema arabicum HOM05D001558 ORTHO05D005808 1.1e-44 183.7 158 61.4
EL10Ac7g16875 Beta vulgaris HOM05D001558 ORTHO05D005808 1.1e-44 183.7 159 59.7
Eucgr.K02568 Eucalyptus grandis HOM05D001558 ORTHO05D005808 1.1e-44 183.7 164 61.0
MBI05_g03435_MAGBIO Magnolia biondii HOM05D001558 ORTHO05D005808 1.1e-44 183.7 161 64.0
Nitab4.5_0000573g0160 Nicotiana tabacum HOM05D001558 ORTHO05D005808 2.0e-44 183.0 171 56.7
Sp3g09780 Schrenkiella parvula HOM05D001558 ORTHO05D005808 3.3e-44 182.2 147 63.9
PGR142G1086 Punica granatum HOM05D001558 ORTHO05D005808 5.7e-44 181.4 169 58.6
THA.LOC104816601 Tarenaya hassleriana HOM05D001558 ORTHO05D005808 5.7e-44 181.4 144 63.2
Carub.0003s1086 Capsella rubella HOM05D001558 ORTHO05D005808 7.4e-44 181.0 145 64.1
BraA05t22574Z Brassica rapa HOM05D001558 ORTHO05D005808 9.7e-44 180.6 147 63.9
MSTRG.19276 Avicennia marina HOM05D001558 ORTHO05D005808 1.3e-43 180.3 175 57.1
BcaC05g29357 Brassica carinata HOM05D001558 ORTHO05D005808 2.2e-43 179.5 145 64.8
C05p56410 Brassica napus HOM05D001558 ORTHO05D005808 2.2e-43 179.5 145 64.8
BolC5t34308H Brassica oleracea HOM05D001558 ORTHO05D005808 2.2e-43 179.5 145 64.8
BcaB04g18647 Brassica carinata HOM05D001558 ORTHO05D005808 2.8e-43 179.1 144 64.6
CARHR086090 Cardamine hirsuta HOM05D001558 ORTHO05D005808 4.8e-43 178.3 147 62.6
Migut.J01002 Erythranthe guttata HOM05D001558 ORTHO05D005808 4.8e-43 178.3 172 58.7
HanXRQChr05g0133061 Helianthus annuus HOM05D001558 ORTHO05D005808 4.8e-43 178.3 164 58.5
ATR0820G233 Amborella trichopoda HOM05D001558 ORTHO05D005808 1.1e-42 177.2 147 63.3
SGA_v2.0_scaffold13G06695 Striga asiatica HOM05D001558 ORTHO05D005808 2.4e-42 176.0 161 57.8
Actinidia05401 Actinidia chinensis HOM05D001558 ORTHO05D005808 3.1e-42 175.6 159 59.7
Aqoxy4G02724 Aquilegia oxysepala HOM05D001558 ORTHO05D005808 3.1e-42 175.6 166 59.6
BraA03t12875Z Brassica rapa HOM05D001558 ORTHO05D005808 4.1e-42 175.3 144 63.2
PSO339G4154 Papaver somniferum HOM05D001558 ORTHO05D005808 7.0e-42 174.5 178 55.6
PSO384G0942 Papaver somniferum HOM05D001558 ORTHO05D005808 7.0e-42 174.5 178 55.6
Os08g0559300 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D005808 2.0e-41 172.9 125 67.2
C03p45000 Brassica napus HOM05D001558 ORTHO05D005808 2.6e-41 172.6 144 61.8
BolC3t16760H Brassica oleracea HOM05D001558 ORTHO05D005808 2.6e-41 172.6 144 61.8
BcaC01g04107 Brassica carinata HOM05D001558 ORTHO05D005808 4.5e-41 171.8 144 61.8
DCAR_008674 Daucus carota HOM05D001558 ORTHO05D005808 4.5e-41 171.8 148 60.8
Lj3A1009G52 Lonicera japonica HOM05D001558 ORTHO05D005808 5.9e-41 171.4 165 57.0
Lsat_1_v5_gn_8_74960 Lactuca sativa HOM05D001558 ORTHO05D005808 1.0e-40 170.6 167 55.1
DCAR_012896 Daucus carota HOM05D001558 ORTHO05D005808 2.2e-40 169.5 148 61.5
Cc06_g06160 Coffea canephora HOM05D001558 ORTHO05D005808 1.1e-39 167.2 165 53.3
HPP92_001984 Vanilla planifolia HOM05D001558 ORTHO05D005808 1.5e-39 166.8 156 57.1
HanXRQChr06g0176131 Helianthus annuus HOM05D001558 ORTHO05D005808 1.6e-38 163.3 164 53.0
CDE11G0510 Ceratophyllum demersum HOM05D001558 ORTHO05D005808 1.0e-37 160.6 139 59.7
Zm00001eb039370 Zea mays HOM05D001558 ORTHO05D005808 1.0e-37 160.6 134 61.2
A03p37150 Brassica napus HOM05D001558 ORTHO05D005808 1.8e-37 159.8 169 53.3
AUR62036988 Chenopodium quinoa HOM05D001558 ORTHO05D005808 2.6e-36 156.0 141 58.9
ECA236G3012 Erigeron canadensis HOM05D001558 ORTHO05D005808 2.8e-35 152.5 106 67.0
SHI12376 Sapria himalayana HOM05D001558 ORTHO05D005808 4.8e-35 151.8 157 56.1
Ah.02g111800 Amaranthus hybridus HOM05D001558 ORTHO05D005808 8.2e-35 151.0 158 56.3
unitig_744.g24703 Utricularia gibba HOM05D001558 ORTHO05D005808 1.2e-33 147.1 156 53.2
SEGI_01931 Sequoiadendron giganteum HOM05D001558 ORTHO05D005808 2.0e-33 146.4 98 71.4
Mapoly0020s0107 Marchantia polymorpha HOM05D001558 ORTHO05D005808 1.2e-30 137.1 99 64.6
Psat2g117440 Pisum sativum HOM05D001558 ORTHO05D005808 4.0e-29 132.1 167 47.3
SMO334G0063 Selaginella moellendorffii HOM05D001558 ORTHO05D005808 9.8e-28 127.5 138 51.4
CBR_g30524 Chara braunii HOM05D001558 ORTHO05D000048 1.7e-27 126.7 97 62.9
Pp3c1_2450 Physcomitrium patens HOM05D001558 ORTHO05D005808 8.3e-27 124.4 95 61.1
Pp3c1_2460 Physcomitrium patens HOM05D001558 ORTHO05D005808 8.3e-27 124.4 95 61.1
AagrBONN_evm.TU.Sc2ySwM_228.5709 Anthoceros agrestis HOM05D001558 ORTHO05D005808 5.4e-26 121.7 93 61.3
Pp3c2_30810 Physcomitrium patens HOM05D001558 ORTHO05D005808 7.0e-26 121.3 95 58.9
HPP92_001970 Vanilla planifolia HOM05D001558 ORTHO05D005808 1.0e-24 117.5 78 73.1
MCO11G381 Micromonas commoda HOM05D001558 ORTHO05D005808 2.3e-13 79.7 96 44.8
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 2.0e-09 66.6 62 56.5
Cre12.g552851 Chlamydomonas reinhardtii HOM05D001558 ORTHO05D005808 2.3e-08 63.2 71 45.1
Psat3g108920 Pisum sativum HOM05D001558 ORTHO05D037365 6.2e-06 55.1 61 52.5


User provided reference genes

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