Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 0.0e+00 1752.6 878 100.0
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.3e-216 757.3 900 51.3
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 6.5e-216 755.0 917 50.7
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.2e-214 750.7 904 50.3
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.6e-214 750.4 899 49.9
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 1.3e-211 740.7 917 49.4
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.2e-206 724.2 918 49.5
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 5.2e-205 718.8 909 48.7
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.2e-201 707.6 909 49.2
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 7.2e-199 698.4 916 48.6
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 8.8e-197 691.4 909 48.5
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 3.5e-193 679.5 902 46.6
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 1.2e-190 671.0 913 46.3
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 6.1e-190 668.7 904 47.2
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 5.7e-188 662.1 909 47.2
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 5.4e-186 655.6 906 46.0
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 1.3e-184 651.0 917 46.3
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.6e-180 636.7 899 46.5
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 2.6e-180 636.7 915 45.4
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.9e-179 633.3 899 45.6
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.1e-178 629.4 895 45.7
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 9.2e-178 628.2 904 45.1
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 2.1e-174 617.1 904 44.1
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 1.1e-173 614.8 910 46.4
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.3e-171 607.8 927 43.4
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 1.4e-170 604.4 915 43.3
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 2.4e-170 603.6 919 45.3
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 9.2e-170 601.7 908 44.4
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 1.2e-169 601.3 914 43.7
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 6.0e-169 599.0 921 43.5
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 1.3e-168 597.8 903 44.4
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 3.0e-168 596.7 923 43.2
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 5.1e-168 595.9 919 44.0
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 6.6e-168 595.5 881 45.2
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 3.3e-167 593.2 922 43.6
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 5.6e-167 592.4 907 45.0
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 1.1e-165 588.2 911 43.5
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 8.9e-165 585.1 902 43.5
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 7.6e-164 582.0 903 42.1
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 9.9e-164 581.6 899 43.5
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 1.7e-163 580.9 887 44.0
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 4.9e-163 579.3 887 44.1
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 1.1e-162 578.2 901 43.6
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 2.4e-162 577.0 920 42.0
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.2e-162 576.6 909 42.9
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 7.1e-162 575.5 1085 39.2
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 9.2e-162 575.1 887 44.1
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 1.3e-160 571.2 903 43.2
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.3e-159 566.2 902 43.2
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 9.6e-159 565.1 909 43.0
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 1.2e-156 558.1 913 41.1
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 7.6e-156 555.4 921 41.2
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 1.7e-155 554.3 907 41.5
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 3.5e-153 546.6 922 42.5
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 7.8e-153 545.4 923 39.7
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 1.7e-152 544.3 923 40.7
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 4.3e-151 539.7 896 40.6
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 3.1e-149 533.5 906 40.9
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 4.0e-149 533.1 467 64.0
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 2.4e-146 523.9 917 39.5
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.7e-145 520.4 661 50.4
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 2.7e-145 520.4 910 40.9
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 6.0e-145 519.2 593 53.8
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 1.3e-144 518.1 586 53.2
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 2.3e-144 517.3 911 39.1
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 8.7e-144 515.4 903 40.3
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 2.4e-141 507.3 913 38.6
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.1e-138 498.4 942 37.2
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 7.9e-137 492.3 919 39.5
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.5e-135 488.0 924 37.9
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 7.4e-135 485.7 904 38.6
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 3.4e-132 476.9 911 39.5
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 2.2e-131 474.2 913 38.0
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 3.8e-131 473.4 902 38.7
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 1.9e-130 471.1 572 51.2
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 3.2e-130 470.3 864 40.5
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.9e-128 463.4 906 38.6
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 1.5e-127 461.5 916 38.2
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 1.5e-127 461.5 902 39.9
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 4.3e-127 459.9 912 38.6
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 3.7e-126 456.8 467 55.9
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 3.2e-122 443.7 740 40.7
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.8e-112 411.4 467 52.9
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 8.8e-112 409.1 617 41.7
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.5e-111 408.3 942 34.9
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.1e-109 402.1 581 47.2
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.9e-106 391.3 910 34.6
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 1.8e-101 374.8 748 38.0
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 3.1e-101 374.0 928 33.6
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 4.1e-101 373.6 974 33.6
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 1.2e-100 372.1 910 33.1
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 4.2e-98 363.6 404 53.7
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.7e-91 341.7 616 38.3
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 1.4e-85 322.0 924 31.5
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 1.8e-85 321.6 298 62.8
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 2.7e-84 317.8 628 38.2
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 2.1e-81 308.1 431 45.5
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 2.2e-78 298.1 305 58.4
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 4.9e-78 297.0 310 57.1
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-57 227.6 281 47.3
Haze_23627 Corylus avellana HOM05D004148 ORTHO05D004709 1.8e-56 225.3 409 38.6
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 3.1e-56 224.6 450 36.0
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 2.6e-55 221.5 235 55.7
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 3.2e-53 214.5 589 30.6
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 1.6e-52 212.2 468 35.7
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 2.0e-47 195.3 340 39.4
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 9.9e-47 193.0 490 32.7
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 9.6e-42 176.4 300 44.3
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 9.9e-39 166.4 392 32.7
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 2.4e-37 161.8 173 49.1
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.6e-36 159.1 280 42.9
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 5.6e-34 150.6 410 32.2
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 1.6e-33 149.1 135 65.2
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 8.1e-33 146.7 726 24.1
CARHR148450 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.5e-31 142.5 374 34.8
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 2.2e-30 138.7 475 29.7
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 5.4e-29 134.0 257 36.2
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 1.2e-28 132.9 210 48.6
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 3.5e-28 131.3 907 23.2
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 5.1e-27 127.5 125 54.4
MD03G1162300 Malus domestica HOM05D004148 ORTHO05D004709 8.7e-27 126.7 230 40.4
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 2.8e-25 121.7 94 61.7
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-21 109.8 111 62.2
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 1.1e-21 109.8 111 62.2
CARHR289540 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.2e-20 106.3 141 44.7
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 1.2e-20 106.3 102 53.9
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 6.7e-19 100.5 112 60.7
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 1.4e-16 92.8 130 41.5
SHI25294 Sapria himalayana HOM05D004148 ORTHO05D004709 3.4e-15 88.2 195 31.3
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 4.9e-14 84.3 112 51.8
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 1.9e-13 82.4 111 52.3
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 1.9e-13 82.4 111 52.3
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 1.9e-13 82.4 111 52.3
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 1.9e-13 82.4 111 52.3
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 2.1e-12 79.0 118 50.8
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.1e-12 77.4 230 32.2
Psat3g010920 Pisum sativum HOM05D004148 ORTHO05D004709 7.9e-12 77.0 146 34.2
Thhalv10029231m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 3.3e-10 71.6 82 52.4
unitig_21.g20311 Utricularia gibba HOM05D004148 ORTHO05D004709 4.5e-07 61.2 193 28.0


User provided reference genes

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