Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 3.3e-305 1050.8 508 100.0
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 2.3e-152 543.1 318 80.5
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 8.6e-152 541.2 318 80.5
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 1.4e-149 533.9 310 81.6
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 3.0e-149 532.7 316 78.8
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 3.0e-149 532.7 316 78.8
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 3.0e-149 532.7 315 80.0
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 4.0e-149 532.3 308 81.2
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 1.2e-148 530.8 310 79.7
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.2e-148 530.8 310 79.7
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 1.2e-148 530.8 319 78.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 1.5e-148 530.4 308 81.5
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.4e-148 528.9 318 78.3
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 7.5e-148 528.1 318 78.3
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 1.3e-147 527.3 310 79.4
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 1.7e-147 526.9 320 77.5
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.7e-147 526.9 310 79.4
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 2.2e-147 526.6 310 79.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-147 526.6 310 79.4
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 2.2e-147 526.6 307 80.8
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 3.7e-147 525.8 318 77.4
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 3.7e-147 525.8 318 77.4
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 4.9e-147 525.4 315 79.4
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 8.3e-147 524.6 310 78.7
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 1.1e-146 524.2 324 76.2
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.8e-146 523.5 310 78.7
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 5.4e-146 521.9 308 79.5
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 5.4e-146 521.9 376 67.6
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 7.0e-146 521.5 309 78.0
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 1.2e-145 520.8 324 73.8
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 1.6e-145 520.4 309 78.0
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 1.6e-145 520.4 309 78.0
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 2.0e-145 520.0 316 76.6
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 2.0e-145 520.0 316 77.5
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 2.7e-145 519.6 316 76.9
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 3.5e-145 519.2 308 79.2
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 5.9e-145 518.5 316 77.5
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 1.7e-144 516.9 309 78.0
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 2.9e-144 516.2 310 77.4
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 2.9e-144 516.2 309 76.4
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 3.9e-144 515.8 310 76.1
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 1.1e-143 514.2 309 77.7
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 1.1e-143 514.2 310 75.8
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 3.3e-143 512.7 318 74.2
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 5.6e-143 511.9 320 76.6
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 1.6e-142 510.4 309 77.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.0e-141 507.7 308 75.0
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 2.3e-141 506.5 325 72.9
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 1.2e-140 504.2 325 72.0
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 2.0e-140 503.4 308 74.4
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 2.0e-140 503.4 325 72.0
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 4.4e-140 502.3 318 73.9
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 1.3e-139 500.7 324 71.3
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.3e-139 500.7 325 72.3
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 1.7e-139 500.4 308 73.1
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 1.7e-139 500.4 359 68.0
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 3.7e-139 499.2 318 75.5
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 3.7e-139 499.2 318 73.0
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 6.4e-139 498.4 324 71.9
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 1.1e-138 497.7 310 75.2
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 1.1e-138 497.7 324 71.3
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 1.9e-138 496.9 324 70.1
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 2.4e-138 496.5 325 71.7
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 2.4e-138 496.5 318 73.0
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 2.4e-138 496.5 324 70.7
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 4.1e-138 495.7 324 70.7
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 5.4e-138 495.4 324 70.7
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 5.4e-138 495.4 310 75.2
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 7.0e-138 495.0 324 70.7
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 1.2e-137 494.2 309 77.0
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 1.2e-137 494.2 324 70.7
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 3.5e-137 492.7 310 73.9
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 4.6e-137 492.3 324 70.4
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 1.7e-136 490.3 310 72.9
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 3.0e-136 489.6 318 70.8
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 1.1e-135 487.6 324 69.1
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 1.1e-135 487.6 316 71.8
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 5.6e-135 485.3 316 74.4
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 9.5e-135 484.6 310 74.2
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 4.7e-134 482.3 316 72.8
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 4.0e-133 479.2 310 69.4
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 1.5e-132 477.2 310 69.0
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 2.6e-132 476.5 419 58.7
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 6.0e-129 465.3 328 67.4
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 7.3e-127 458.4 314 68.2
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 1.1e-125 454.5 276 76.4
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.5e-124 450.7 310 68.1
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 7.5e-124 448.4 309 68.0
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 6.4e-123 445.3 259 82.2
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 2.5e-119 433.3 309 66.7
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 4.4e-116 422.5 318 64.8
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 2.5e-111 406.8 238 81.5
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 1.1e-109 401.4 238 79.8
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 2.4e-109 400.2 250 72.4
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.5e-105 386.3 336 60.4
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.1e-101 374.8 310 56.5
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.7e-99 367.5 308 56.2
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 1.9e-98 364.0 310 56.5
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 7.9e-97 358.6 227 74.0
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 4.8e-94 349.4 318 56.9
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 8.1e-94 348.6 309 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 4.5e-92 342.8 312 52.9
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 9.6e-87 325.1 192 80.7
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 8.4e-83 312.0 314 51.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.9e-75 287.0 171 80.1
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.5e-60 238.0 140 78.6
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 5.9e-52 209.5 118 82.2
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 2.0e-44 184.5 122 73.8
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 3.8e-43 180.3 138 64.5
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.3e-30 138.7 73 82.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 8.3e-30 136.0 76 80.3
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 7.8e-28 129.4 89 69.7
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 2.9e-27 127.5 228 33.3
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.4e-24 118.6 323 26.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 5.2e-24 116.7 99 54.5
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 3.4e-23 114.0 75 74.7
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 7.0e-21 106.3 69 71.0
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 7.8e-20 102.8 58 79.3
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.8e-16 91.7 304 26.6
Cpa.g.sc104.17 Carica papaya HOM05D000003 ORTHO05D000004 5.2e-16 90.1 133 38.3
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 4.4e-15 87.0 46 80.4
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 3.7e-14 84.0 54 63.0
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 1.1e-13 82.4 61 63.9
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 4.1e-13 80.5 53 69.8
Cpa.g.sc2.104 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-12 79.0 150 29.3
Cpa.g.sc36.51 Carica papaya HOM05D000003 ORTHO05D000004 2.7e-12 77.8 73 49.3
Cpa.g.sc58.58 Carica papaya HOM05D000003 ORTHO05D000004 1.0e-11 75.9 173 28.9
Cpa.g.sc35.73 Carica papaya HOM05D000003 ORTHO05D000004 6.6e-11 73.2 65 52.3
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 8.6e-11 72.8 85 50.6
Cpa.g.sc51.82 Carica papaya HOM05D000003 ORTHO05D000004 1.1e-10 72.4 66 45.5
Cpa.g.sc176.22 Carica papaya HOM05D000003 ORTHO05D000004 2.5e-10 71.2 106 39.6
Cpa.g.sc21.153 Carica papaya HOM05D000003 ORTHO05D000004 2.5e-10 71.2 62 50.0
Cpa.g.sc425.1 Carica papaya HOM05D000003 ORTHO05D000004 3.3e-10 70.9 152 27.0
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 3.3e-10 70.9 36 83.3
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 4.3e-10 70.5 58 60.3
Cpa.g.sc34.10 Carica papaya HOM05D000003 ORTHO05D000004 5.6e-10 70.1 101 36.6
Cpa.g.sc2.64 Carica papaya HOM05D000003 ORTHO05D000004 7.3e-10 69.7 62 50.0
Cpa.g.sc50.55 Carica papaya HOM05D000003 ORTHO05D000004 9.5e-10 69.3 68 45.6
Cpa.g.sc37.66 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-09 68.9 58 50.0
Cpa.g.sc102.27 Carica papaya HOM05D000003 ORTHO05D000004 2.1e-09 68.2 72 47.2
Cpa.g.sc7.229 Carica papaya HOM05D000003 ORTHO05D000004 2.1e-09 68.2 73 43.8
Cpa.g.sc44.94 Carica papaya HOM05D000003 ORTHO05D000004 3.6e-09 67.4 62 43.5
Aqoxy3G01394 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.1e-09 66.2 106 35.8
Cpa.g.sc232.8 Carica papaya HOM05D000528 ORTHO05D022244 8.1e-09 66.2 58 51.7
Cpa.g.sc418.2 Carica papaya HOM05D000003 ORTHO05D000004 1.8e-08 65.1 66 43.9
Cpa.g.sc60.23 Carica papaya HOM05D000003 ORTHO05D000004 4.0e-08 63.9 62 40.3
Cpa.g.sc92.79 Carica papaya HOM05D000003 ORTHO05D000004 4.0e-08 63.9 57 49.1
MBI05_g34748_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.0e-08 63.9 116 31.0
QL03p058992 Quercus lobata HOM05D000003 ORTHO05D000004 4.0e-08 63.9 133 35.3
Cpa.g.sc5.84 Carica papaya HOM05D023535 ORTHO05D000004 5.2e-08 63.5 68 45.6
Cpa.g.sc173.19 Carica papaya HOM05D000003 ORTHO05D000004 6.8e-08 63.2 64 40.6
Cpa.g.sc98.21 Carica papaya HOM05D000003 ORTHO05D000004 8.9e-08 62.8 111 34.2
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 8.9e-08 62.8 144 29.2
Cpa.g.sc60.64 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-07 62.4 62 43.5
Cpa.g.sc11.58 Carica papaya HOM05D000003 ORTHO05D000004 2.0e-07 61.6 57 43.9
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 2.6e-07 61.2 47 61.7
Cpa.g.sc11.147 Carica papaya HOM05D002119 ORTHO05D002209 3.4e-07 60.8 169 27.8
Cpa.g.sc214.3 Carica papaya HOM05D000003 ORTHO05D000004 3.4e-07 60.8 167 25.7
Cpa.g.sc18.151 Carica papaya HOM05D000921 ORTHO05D002852 5.8e-07 60.1 97 34.0
Cpa.g.sc2827.2 Carica papaya HOM05D000003 ORTHO05D000004 5.8e-07 60.1 144 29.9
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 5.8e-07 60.1 291 22.3
Cpa.g.sc1.146 Carica papaya HOM05D000003 ORTHO05D000004 1.3e-06 58.9 63 47.6
Aqoxy4G01686 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.7e-06 58.5 58 41.4
Cpa.g.sc54.22 Carica papaya HOM05D000003 ORTHO05D000004 1.7e-06 58.5 83 41.0
Cpa.g.sc37.44 Carica papaya HOM05D000003 ORTHO05D000004 2.2e-06 58.2 150 27.3
Aqoxy4G01680 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.9e-06 57.8 58 41.4
Cpa.g.sc32.125 Carica papaya HOM05D000003 ORTHO05D000004 2.9e-06 57.8 62 46.8
Aqoxy5G02950 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.7e-06 57.4 110 30.0
MBI16_g26379_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.7e-06 57.4 63 42.9
Aqoxy6G02709 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.9e-06 57.0 63 38.1
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 4.9e-06 57.0 53 45.3
Aqoxy2G01405 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.4e-06 56.6 201 25.4
Aqoxy4G01517 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.4e-06 56.6 58 41.4
Cpa.g.sc72.17 Carica papaya HOM05D000003 ORTHO05D000004 6.4e-06 56.6 55 45.5
Cpa.g.sc139.50 Carica papaya HOM05D000003 ORTHO05D000004 8.4e-06 56.2 97 36.1
Cpa.g.sc32.45 Carica papaya HOM05D000003 ORTHO05D000004 8.4e-06 56.2 74 41.9


User provided reference genes

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