Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.385 Carica papaya HOM05D005343 ORTHO05D007153 1.4e-153 546.2 273 100.0
Cpa.g.sc1.387 Carica papaya HOM05D005343 ORTHO05D007153 9.1e-108 394.0 309 71.2
Duzib114G0552 Durio zibethinus HOM05D005343 ORTHO05D007153 1.1e-89 334.0 254 70.5
CiPaw.01G284500 Carya illinoinensis HOM05D005343 ORTHO05D007153 7.5e-86 321.2 306 58.8
QL08p059100 Quercus lobata HOM05D005343 ORTHO05D007153 9.8e-86 320.9 306 58.8
Cfa001500 Carpinus fangiana HOM05D005343 ORTHO05D007153 1.0e-82 310.8 306 57.5
GSVIVG01016575001 Vitis vinifera HOM05D005343 ORTHO05D007153 2.3e-82 309.7 306 58.5
Manes.10G032600 Manihot esculenta HOM05D005343 ORTHO05D007153 2.9e-82 309.3 306 57.8
Thecc.10G046300 Theobroma cacao HOM05D005343 ORTHO05D007153 2.8e-80 302.8 306 57.5
Rhsim09G0164800 Rhododendron simsii HOM05D005343 ORTHO05D007153 3.6e-80 302.4 306 56.5
Lj5g0009366 Lotus japonicus HOM05D005343 ORTHO05D007153 4.7e-80 302.0 307 56.0
RcHm_v2.0_Chr3g0483011 Rosa chinensis HOM05D005343 ORTHO05D007153 1.0e-79 300.8 307 56.4
Ca_11289_v3 Cicer arietinum L. HOM05D005343 ORTHO05D007153 2.3e-79 299.7 307 55.0
Glyma.20G099600 Glycine max HOM05D005343 ORTHO05D007153 3.0e-79 299.3 307 55.4
MD01G1125100 Malus domestica HOM05D005343 ORTHO05D007153 3.0e-79 299.3 308 55.8
MD07G1194800 Malus domestica HOM05D005343 ORTHO05D007153 5.2e-79 298.5 308 56.2
Dinv25995 Davidia involucrata HOM05D005343 ORTHO05D007153 6.8e-79 298.1 308 56.5
Ciclev10030995m.g Citrus clementina HOM05D005343 ORTHO05D007153 1.2e-78 297.4 308 56.2
ECA232G2382 Erigeron canadensis HOM05D005343 ORTHO05D007153 1.5e-78 297.0 306 55.6
TWI63G0552 Tripterygium wilfordii HOM05D005343 ORTHO05D007153 2.6e-78 296.2 306 55.2
COL.COLO4_14979 Corchorus olitorius HOM05D005343 ORTHO05D007153 3.4e-78 295.8 308 55.8
FvH4_6g24170 Fragaria vesca HOM05D005343 ORTHO05D007153 5.7e-78 295.0 307 55.0
FvH4_6g51210 Fragaria vesca HOM05D005343 ORTHO05D007153 1.7e-77 293.5 307 55.0
Nitab4.5_0006342g0040 Nicotiana tabacum HOM05D005343 ORTHO05D007153 1.7e-77 293.5 304 55.9
Prupe.2G232400 Prunus persica HOM05D005343 ORTHO05D007153 1.7e-77 293.5 306 54.9
FAN14G3830 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.2e-77 293.1 308 54.9
Gorai.011G256000 Gossypium raimondii HOM05D005343 ORTHO05D007153 2.2e-77 293.1 307 55.4
THA.LOC104807113 Tarenaya hassleriana HOM05D005343 ORTHO05D007153 2.8e-77 292.7 284 58.5
CsaV3_5G026430 Cucumis sativus L. HOM05D005343 ORTHO05D007153 4.9e-77 292.0 308 55.5
arahy.Tifrunner.gnm1.ann1.23BIS9 Arachis hypogaea HOM05D005343 ORTHO05D007153 6.3e-77 291.6 308 54.5
arahy.Tifrunner.gnm1.ann1.VWL0PE Arachis hypogaea HOM05D005343 ORTHO05D007153 6.3e-77 291.6 308 54.5
CANSAT56G3579 Cannabis sativa HOM05D005343 ORTHO05D007153 6.3e-77 291.6 308 53.6
Gohir.D10G225000 Gossypium hirsutum HOM05D005343 ORTHO05D007153 6.3e-77 291.6 307 55.0
CANSAT56G3076 Cannabis sativa HOM05D005343 ORTHO05D007153 8.3e-77 291.2 308 53.6
HanXRQChr09g0247741 Helianthus annuus HOM05D005343 ORTHO05D007153 8.3e-77 291.2 306 54.9
Medtr1g115295 Medicago truncatula HOM05D005343 ORTHO05D007153 8.3e-77 291.2 308 54.2
Actinidia29218 Actinidia chinensis HOM05D005343 ORTHO05D007153 1.4e-76 290.4 254 62.2
Sabra10G0160100 Salix brachista HOM05D005343 ORTHO05D007153 1.4e-76 290.4 308 54.9
Gohir.A10G216000 Gossypium hirsutum HOM05D005343 ORTHO05D007153 1.8e-76 290.0 307 54.7
MELO3C025447.2 Cucumis melo HOM05D005343 ORTHO05D007153 2.4e-76 289.7 304 55.3
FAN09G3765 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.2e-76 289.3 310 53.9
TPR.G14011 Trifolium pratense HOM05D005343 ORTHO05D007153 3.2e-76 289.3 309 54.7
FAN02G3866 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.1e-76 288.9 303 54.8
Potri.010G207300 Populus trichocarpa HOM05D005343 ORTHO05D007153 4.1e-76 288.9 308 54.5
Phvul.007G011800 Phaseolus vulgaris HOM05D005343 ORTHO05D007153 5.4e-76 288.5 310 53.2
CAN.G1013.7 Capsicum annuum HOM05D005343 ORTHO05D007153 7.0e-76 288.1 305 55.1
ClCG09G020030 Citrullus lanatus HOM05D005343 ORTHO05D007153 7.0e-76 288.1 307 54.7
VMungo0720G2355 Vigna mungo HOM05D005343 ORTHO05D007153 7.0e-76 288.1 309 54.4
Psat6g236000 Pisum sativum HOM05D005343 ORTHO05D007153 9.2e-76 287.7 308 53.9
DCAR_015189 Daucus carota HOM05D005343 ORTHO05D007153 1.6e-75 287.0 306 53.9
Lj8A86G38 Lonicera japonica HOM05D005343 ORTHO05D007153 1.6e-75 287.0 306 54.2
Oeu059403.2 Olea europaea HOM05D005343 ORTHO05D007153 1.6e-75 287.0 308 53.9
Sed0015228 Sechium edule HOM05D005343 ORTHO05D007153 3.5e-75 285.8 304 54.6
Sopen05g033080 Solanum pennellii HOM05D005343 ORTHO05D007153 3.5e-75 285.8 299 55.2
Solyc05g054600.3 Solanum lycopersicum HOM05D005343 ORTHO05D007153 4.5e-75 285.4 299 54.8
CDE04G3770 Ceratophyllum demersum HOM05D005343 ORTHO05D007153 1.0e-74 284.3 308 52.3
CSS0002854 Camellia sinensis var. sinensis HOM05D005343 ORTHO05D007153 1.7e-74 283.5 286 56.3
Nn7g38223 Nelumbo nucifera HOM05D005343 ORTHO05D007153 1.7e-74 283.5 306 53.6
Lsat_1_v5_gn_9_65321 Lactuca sativa HOM05D005343 ORTHO05D007153 2.5e-73 279.6 314 51.6
PSO339G4546 Papaver somniferum HOM05D005343 ORTHO05D007153 4.3e-73 278.9 301 53.8
AT3G55400 Arabidopsis thaliana HOM05D005343 ORTHO05D007153 5.6e-73 278.5 316 53.5
FAN14G5877 Fragaria x ananassa HOM05D005343 ORTHO05D007153 7.3e-73 278.1 350 48.0
Aqoxy4G02977 Aquilegia oxysepala HOM05D005343 ORTHO05D007153 9.5e-73 277.7 312 53.2
PSO541G2783 Papaver somniferum HOM05D005343 ORTHO05D007153 9.5e-73 277.7 304 53.0
Cc02_g08110 Coffea canephora HOM05D005343 ORTHO05D007153 1.2e-72 277.3 308 52.9
ATR0730G097 Amborella trichopoda HOM05D005343 ORTHO05D007153 2.8e-72 276.2 306 52.3
Carub.0005s2211 Capsella rubella HOM05D005343 ORTHO05D007153 2.8e-72 276.2 307 54.1
AL5G36550 Arabidopsis lyrata HOM05D005343 ORTHO05D007153 1.8e-71 273.5 316 52.5
PSO384G0408 Papaver somniferum HOM05D005343 ORTHO05D007153 2.3e-71 273.1 301 53.2
PGR142G2259 Punica granatum HOM05D005343 ORTHO05D007153 2.3e-71 273.1 299 53.2
Sp5g07070 Schrenkiella parvula HOM05D005343 ORTHO05D007153 3.1e-71 272.7 286 55.2
Sc04g0005120 Simmondsia chinensis HOM05D005343 ORTHO05D007153 6.8e-71 271.6 309 52.8
Atru.BG.276.p Acer truncatum HOM05D005343 ORTHO05D007153 8.9e-71 271.2 279 55.6
Eucgr.J00041 Eucalyptus grandis HOM05D005343 ORTHO05D007153 2.0e-70 270.0 284 54.2
Thhalv10010210m.g Eutrema salsugineum HOM05D005343 ORTHO05D007153 2.6e-70 269.6 309 52.8
BcaB01g00104 Brassica carinata HOM05D005343 ORTHO05D007153 1.3e-69 267.3 284 54.2
CARHR165410 Cardamine hirsuta HOM05D005343 ORTHO05D007153 1.3e-69 267.3 309 52.1
PGSC0003DMG400023422 Solanum tuberosum HOM05D005343 ORTHO05D007153 1.3e-69 267.3 325 50.2
Hund12544 Selenicereus undatus HOM05D005343 ORTHO05D007153 2.2e-69 266.5 309 51.1
HPP92_007845 Vanilla planifolia HOM05D005343 ORTHO05D007153 2.2e-69 266.5 284 53.2
Peaxi162Scf00015g01517 Petunia axillaris HOM05D005343 ORTHO05D007153 2.9e-69 266.2 378 45.2
Aa31LG10G10420 Aethionema arabicum HOM05D005343 ORTHO05D007153 3.7e-69 265.8 306 52.3
EL10Ac2g03414 Beta vulgaris HOM05D005343 ORTHO05D007153 6.4e-69 265.0 311 51.4
AUR62040959 Chenopodium quinoa HOM05D005343 ORTHO05D007153 1.1e-68 264.2 311 50.8
Hma1.2p1_2133F.1_g314780 Hydrangea macrophylla HOM05D005343 ORTHO05D007153 2.4e-68 263.1 339 49.0
Nitab4.5_0001831g0140 Nicotiana tabacum HOM05D005343 ORTHO05D007153 3.2e-68 262.7 282 54.6
A09p48330 Brassica napus HOM05D005343 ORTHO05D007153 5.4e-68 261.9 280 53.9
BraA09t40285Z Brassica rapa HOM05D005343 ORTHO05D007153 5.4e-68 261.9 280 53.9
C08p30620 Brassica napus HOM05D005343 ORTHO05D007153 9.2e-68 261.2 283 53.7
SGA_v2.0_scaffold165G38273 Striga asiatica HOM05D005343 ORTHO05D007153 1.2e-67 260.8 308 50.0
BcaC07g39858 Brassica carinata HOM05D005343 ORTHO05D007153 1.6e-67 260.4 283 53.4
AUR62038368 Chenopodium quinoa HOM05D005343 ORTHO05D007153 2.0e-67 260.0 311 50.2
unitig_62.g23894 Utricularia gibba HOM05D005343 ORTHO05D007153 3.5e-67 259.2 305 49.2
BolC8t50678H Brassica oleracea HOM05D005343 ORTHO05D007153 6.0e-67 258.5 283 53.0
Os03g0209600 Oryza sativa ssp. japonica HOM05D005343 ORTHO05D007153 1.0e-66 257.7 306 48.7
Glyma.10G289600 Glycine max HOM05D005343 ORTHO05D007153 2.2e-61 240.0 267 54.3
Medtr1g018280 Medicago truncatula HOM05D005343 ORTHO05D007153 2.3e-58 229.9 272 52.2
A04p04540 Brassica napus HOM05D005343 ORTHO05D007153 1.2e-56 224.2 306 48.0
Dinv31439 Davidia involucrata HOM05D005343 ORTHO05D007153 1.6e-56 223.8 300 48.3
BraA04t16165Z Brassica rapa HOM05D005343 ORTHO05D007153 2.8e-56 223.0 306 47.7
SMO196G0053 Selaginella moellendorffii HOM05D005343 ORTHO05D007153 2.0e-54 216.9 283 44.2
Mapoly0109s0018 Marchantia polymorpha HOM05D005343 ORTHO05D007153 9.9e-54 214.5 310 42.6
Pp3c15_23530 Physcomitrium patens HOM05D005343 ORTHO05D007153 4.9e-53 212.2 309 43.0
RcHm_v2.0_Chr3g0482991 Rosa chinensis HOM05D005343 ORTHO05D007153 5.4e-52 208.8 192 59.4
TAR636G2926 Trochodendron aralioides HOM05D005343 ORTHO05D007153 6.6e-50 201.8 245 50.2
Lalb_Chr06g0164311 Lupinus albus HOM05D005343 ORTHO05D007153 1.5e-49 200.7 160 65.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.4e-47 194.1 245 49.4
SalBow2G3494 Salvia bowleyana HOM05D005343 ORTHO05D007153 2.4e-47 193.4 160 64.4
Migut.E01300 Erythranthe guttata HOM05D005343 ORTHO05D007153 8.9e-47 191.4 159 64.8
Haze_17041 Corylus avellana HOM05D005343 ORTHO05D007153 9.9e-46 188.0 208 53.4
Cre12.g487100 Chlamydomonas reinhardtii HOM05D005343 ORTHO05D007153 4.0e-39 166.0 306 35.9
TAR636G1387 Trochodendron aralioides HOM05D005343 ORTHO05D007153 3.4e-38 162.9 142 63.4
PRCOL_00006366 Prasinoderma coloniale HOM05D005343 ORTHO05D007153 3.9e-34 149.4 296 33.8
BcaC02g09754 Brassica carinata HOM05D005343 ORTHO05D007153 2.1e-32 143.7 122 63.1
C04p36970 Brassica napus HOM05D005343 ORTHO05D007153 2.1e-32 143.7 122 63.1
C04p36980 Brassica napus HOM05D005343 ORTHO05D007153 2.1e-32 143.7 134 60.4
BolC4t25262H Brassica oleracea HOM05D005343 ORTHO05D007153 2.1e-32 143.7 122 63.1
TAR636G2167 Trochodendron aralioides HOM05D005343 ORTHO05D007153 4.0e-31 139.4 245 39.2
Zm00001eb007130 Zea mays HOM05D005343 ORTHO05D007153 4.0e-31 139.4 122 60.7
FAN09G1498 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.5e-30 137.5 177 47.5
BcaB02g08424 Brassica carinata HOM05D005343 ORTHO05D007153 5.1e-26 122.5 72 80.6
BolC4t25263H Brassica oleracea HOM05D005343 ORTHO05D007153 4.3e-25 119.4 186 43.5
CBR_g833 Chara braunii HOM05D005343 ORTHO05D007153 3.7e-24 116.3 123 49.6
SEGI_38333 Sequoiadendron giganteum HOM05D005343 ORTHO05D007153 1.2e-22 111.3 88 62.5
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 2.1e-19 100.5 167 41.9
COL.COLO4_03753 Corchorus olitorius HOM05D005343 ORTHO05D007153 6.7e-18 95.5 65 70.8
MCO07G098 Micromonas commoda HOM05D005343 ORTHO05D007153 4.8e-16 89.4 263 28.5
BcaC02g09753 Brassica carinata HOM05D005343 ORTHO05D007153 8.2e-16 88.6 167 38.9
AagrBONN_evm.TU.Sc2ySwM_228.5584 Anthoceros agrestis HOM05D005343 ORTHO05D007153 1.0e-13 81.6 62 66.1
Haze_27266 Corylus avellana HOM05D005343 ORTHO05D007153 7.9e-11 72.0 87 46.0
Lalb_Chr06g0164321 Lupinus albus HOM05D005343 ORTHO05D048504 1.9e-09 67.4 69 49.3
MCO01G351 Micromonas commoda HOM05D005343 ORTHO05D007153 3.7e-08 63.2 154 30.5
TAR636G3442 Trochodendron aralioides HOM05D005343 ORTHO05D048504 3.7e-08 63.2 67 52.2
Pp3c12_10530 Physcomitrium patens HOM05D005343 ORTHO05D007153 5.9e-06 55.8 43 53.5


User provided reference genes

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