Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 5.4e-122 442.6 489 100.0
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 3.2e-50 204.1 226 51.3
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 2.1e-49 201.4 212 50.9
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 3.6e-49 200.7 212 52.4
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 5.7e-47 193.4 229 49.3
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 9.1e-45 186.0 178 52.8
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.2e-44 185.7 208 50.0
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 5.9e-44 183.3 226 47.3
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 5.0e-43 180.3 230 44.8
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 8.5e-43 179.5 225 48.0
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.9e-42 178.3 132 59.8
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 7.2e-42 176.4 212 46.2
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.2e-41 175.6 250 43.6
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.6e-41 175.3 229 45.9
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 2.7e-41 174.5 213 46.5
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.4e-40 172.2 212 46.7
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.3e-40 171.4 210 46.2
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 2.0e-39 168.3 215 44.7
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.6e-39 167.9 229 41.5
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 2.2e-38 164.9 205 44.4
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 2.2e-38 164.9 186 48.9
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 4.8e-38 163.7 169 50.9
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 4.8e-38 163.7 131 53.4
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 7.0e-37 159.8 204 42.2
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 9.1e-37 159.5 124 55.6
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 7.7e-36 156.4 159 50.9
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 7.7e-36 156.4 192 44.8
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 3.8e-35 154.1 208 43.3
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 5.0e-35 153.7 143 53.1
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 8.5e-35 152.9 205 41.0
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 1.9e-34 151.8 159 47.2
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 2.5e-34 151.4 181 43.1
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.1e-33 148.3 137 47.4
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 3.6e-33 147.5 211 41.2
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 4.7e-33 147.1 138 52.2
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.3e-32 144.8 174 42.5
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 2.0e-31 141.7 208 39.4
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 3.3e-31 141.0 123 51.2
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.7e-30 138.7 141 46.8
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 5.3e-29 133.7 128 47.7
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 5.3e-29 133.7 140 44.3
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.1e-29 132.9 144 44.4
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.2e-28 132.5 132 45.5
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.6e-28 132.1 144 43.8
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.0e-28 131.7 205 38.0
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 2.0e-28 131.7 127 48.8
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.7e-28 131.3 135 46.7
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 5.9e-28 130.2 213 36.2
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 5.9e-28 130.2 174 39.7
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.3e-27 129.0 184 38.6
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 3.8e-27 127.5 144 41.7
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 5.0e-27 127.1 127 48.0
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 6.5e-27 126.7 196 35.7
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 1.1e-26 125.9 208 36.1
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 1.1e-26 125.9 144 41.0
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 3.2e-26 124.4 211 35.5
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 4.2e-26 124.0 134 44.8
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 5.5e-26 123.6 180 40.0
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 7.2e-26 123.2 160 42.5
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 2.7e-25 121.3 214 38.8
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.7e-25 121.3 211 36.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.7e-25 121.3 137 46.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.7e-25 121.3 209 35.9
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.6e-25 120.9 214 36.0
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.6e-25 120.9 214 36.0
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 6.1e-25 120.2 128 46.1
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 6.1e-25 120.2 224 38.4
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 8.0e-25 119.8 127 45.7
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.4e-24 119.0 217 36.4
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.3e-24 118.2 128 45.3
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.3e-24 118.2 213 38.0
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 2.3e-24 118.2 145 44.1
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 3.0e-24 117.9 217 40.6
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 3.0e-24 117.9 132 46.2
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 3.0e-24 117.9 132 46.2
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 5.2e-24 117.1 215 39.1
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 5.2e-24 117.1 82 59.8
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.5e-23 115.5 149 46.3
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.0e-23 115.2 215 35.8
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 4.4e-23 114.0 216 39.8
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 4.4e-23 114.0 216 39.8
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 5.7e-23 113.6 216 39.4
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 7.5e-23 113.2 213 34.3
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 6.3e-22 110.2 139 44.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.1e-21 109.4 144 41.0
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.6e-20 105.5 128 38.3
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 1.0e-19 102.8 189 37.6
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 2.9e-19 101.3 129 42.6
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 1.8e-16 92.0 105 41.9
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.3e-16 91.7 130 40.0
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 3.0e-16 91.3 132 34.8
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.0e-16 91.3 188 31.4
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 5.2e-16 90.5 82 48.8
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.2e-15 89.4 228 27.6
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 4.4e-15 87.4 189 38.6
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 4.4e-15 87.4 118 42.4
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.3e-14 85.9 77 45.5
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.9e-14 84.0 112 36.6
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.3e-14 83.6 195 31.8
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.8e-13 82.0 129 36.4
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 2.4e-13 81.6 159 36.5
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 7.7e-12 76.6 65 47.7
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 7.7e-12 76.6 83 45.8
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.6e-11 73.6 50 58.0
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.8e-09 68.2 47 57.4
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 2.3e-08 65.1 45 48.9
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 5.2e-08 63.9 50 54.0
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 6.8e-08 63.5 50 56.0
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 1.5e-07 62.4 126 31.7
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.6e-07 61.6 129 27.1
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 4.4e-07 60.8 134 30.6
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 7.5e-07 60.1 134 27.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.3e-06 59.3 127 29.9
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 1.3e-06 59.3 131 31.3
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.3e-06 59.3 47 53.2
DCAR_008181 Daucus carota HOM05D008483 ORTHO05D010726 2.2e-06 58.5 130 28.5
Sp6g21610 Schrenkiella parvula HOM05D007212 ORTHO05D009094 2.2e-06 58.5 126 31.0
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 2.9e-06 58.2 133 27.1
Atru.chr3.3834 Acer truncatum HOM05D007212 ORTHO05D009094 2.9e-06 58.2 122 32.0
Actinidia07048 Actinidia chinensis HOM05D007212 ORTHO05D009094 2.9e-06 58.2 122 28.7
Ciclev10027786m.g Citrus clementina HOM05D007212 ORTHO05D009094 2.9e-06 58.2 122 32.0
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 3.7e-06 57.8 148 29.7
Thhalv10016210m.g Eutrema salsugineum HOM05D007212 ORTHO05D009094 4.9e-06 57.4 126 31.0
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 4.9e-06 57.4 126 30.2
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 4.9e-06 57.4 126 30.2
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 6.4e-06 57.0 130 32.3
CARHR273510 Cardamine hirsuta HOM05D007212 ORTHO05D009094 6.4e-06 57.0 126 31.0
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 6.4e-06 57.0 130 31.5
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 8.3e-06 56.6 49 49.0
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 8.3e-06 56.6 129 29.5


User provided reference genes

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