Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 2022.7 994 100.0
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 1419.8 1093 66.7
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 1382.1 1096 64.7
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 1377.1 1094 64.6
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 1376.7 1093 64.3
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 1367.1 1092 65.1
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 1363.6 1095 64.6
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 1356.7 1095 64.4
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 1355.9 1095 64.1
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 1355.5 1096 63.5
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1350.1 1095 63.8
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 1344.7 1093 63.3
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 1343.2 1099 63.6
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 1338.9 1095 63.5
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 1337.8 1096 63.6
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 1329.7 1096 63.0
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 1328.5 1092 63.0
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1327.0 1096 61.9
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1327.0 1102 62.0
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 1320.8 1094 62.2
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 1318.1 1097 61.7
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 1311.2 1094 61.5
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1301.2 1066 62.5
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1280.0 1096 60.9
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 1277.7 1100 60.4
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 1273.8 1092 60.3
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 1273.5 1091 60.7
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 1272.7 1091 61.1
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 1266.9 1091 60.6
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 1265.8 1095 59.5
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1264.6 1091 59.6
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 1263.1 1088 60.9
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 1262.7 1091 59.5
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 1260.7 1091 59.9
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 1260.4 1091 59.9
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1255.0 1091 59.7
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 1255.0 1091 59.7
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 1255.0 1091 59.9
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 1251.1 1094 58.6
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1250.3 1097 59.0
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 1249.6 1094 58.2
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 1245.3 1097 59.6
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1242.3 1096 58.4
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 1241.9 1097 58.7
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1237.6 1056 62.0
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 1235.3 1099 58.2
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 1231.9 1097 58.2
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 1231.1 1099 57.9
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 1229.2 1097 58.3
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 1228.8 1099 57.9
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 1223.8 1097 58.6
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 1222.6 1099 56.9
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1219.5 1097 58.8
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 1219.5 1099 58.0
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 1219.5 1102 57.6
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 1214.1 1096 57.5
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 1212.2 1095 57.7
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 1208.4 1123 56.5
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1206.0 1093 57.7
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1198.3 1095 57.7
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1198.0 1097 57.8
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 1196.4 1098 56.0
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1194.9 1093 57.6
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 1194.1 1096 56.5
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 1184.1 1095 56.4
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 1184.1 1094 56.3
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 1182.5 1094 56.2
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1178.3 1095 57.2
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 1157.1 1103 55.3
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 1152.1 1103 55.8
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 1140.6 1093 55.1
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 1139.0 1095 54.9
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 1132.5 1098 54.2
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 1132.1 1094 54.5
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 1088.6 1100 51.8
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 8.2e-308 1060.4 1064 55.2
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 7.2e-304 1047.3 1098 51.3
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 9.4e-304 1047.0 1098 50.7
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 1.8e-302 1042.7 1098 50.9
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 1.5e-293 1013.1 1092 49.8
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 3.8e-289 998.4 799 61.5
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 8.5e-289 997.3 799 61.2
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 1.0e-281 973.8 1010 51.9
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.1e-280 970.3 1096 48.4
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 8.1e-255 884.4 1097 47.6
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 3.2e-251 872.5 671 62.1
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 1.4e-222 777.3 1104 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 9.0e-214 748.0 1103 39.4
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.9e-211 740.3 766 52.5
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 1.4e-206 724.2 1099 37.9
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 2.5e-195 686.8 640 58.1
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 9.4e-195 684.9 1096 37.0
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.1e-162 577.4 671 45.5
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 4.4e-160 569.7 305 93.1
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 1.4e-105 388.7 806 32.1
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 1.6e-101 375.2 484 47.1
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 3.3e-91 340.9 1145 27.6
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 2.4e-65 255.0 1296 23.7
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 5.5e-62 243.8 402 40.0
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.2e-58 231.9 375 35.5
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 3.5e-56 224.6 364 34.3
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 4.2e-54 217.6 993 24.6
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 1.7e-50 205.7 152 61.2
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 2.8e-50 204.9 279 41.9
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.0e-48 198.7 333 42.6
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 3.5e-48 198.0 422 36.7
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 8.9e-44 183.3 164 57.9
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.7e-42 179.1 204 45.6
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 9.2e-41 173.3 267 39.3
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.1e-38 166.4 312 35.9
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.1e-33 149.8 167 45.5
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.5e-22 112.8 95 57.9
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 8.6e-15 87.0 59 67.8
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 2.5e-14 85.5 73 53.4
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 3.3e-14 85.1 64 67.2
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 9.6e-14 83.6 138 42.8
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.5e-11 76.3 87 44.8
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 3.2e-09 68.6 69 47.8
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 4.6e-08 64.7 181 30.4
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.1e-06 60.1 33 72.7
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 9.6e-06 57.0 158 25.9


User provided reference genes

Program Settings