Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c45198 Carica papaya HOM05D000929 ORTHO05D030804 6.4e-27 123.2 58 100.0
Cpa.g.sc24.17 Carica papaya HOM05D000929 ORTHO05D004813 6.4e-27 123.2 58 100.0
FvH4_5g25110 Fragaria vesca HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
FAN08G3498 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
FAN13G0018 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
FAN18G2918 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
FAN18G3633 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
QL12p003602 Quercus lobata HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
RcHm_v2.0_Chr4g0407221 Rosa chinensis HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
RcHm_v2.0_Chr7g0215311 Rosa chinensis HOM05D000929 ORTHO05D004813 5.4e-26 120.2 58 98.3
Gohir.D08G169800 Gossypium hirsutum HOM05D000929 ORTHO05D004813 9.2e-26 119.4 58 96.6
Gorai.004G177000 Gossypium raimondii HOM05D000929 ORTHO05D004813 9.2e-26 119.4 58 96.6
Gohir.A08G148700 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.2e-25 119.0 58 96.6
Ciclev10010995m.g Citrus clementina HOM05D000929 ORTHO05D004813 1.6e-25 118.6 58 96.6
Glyma.16G076500 Glycine max HOM05D000929 ORTHO05D004813 1.6e-25 118.6 58 96.6
Glyma.16G109200 Glycine max HOM05D000929 ORTHO05D004813 1.6e-25 118.6 58 96.6
MD07G1052000 Malus domestica HOM05D000929 ORTHO05D004813 1.6e-25 118.6 58 96.6
Cfa012306 Carpinus fangiana HOM05D000929 ORTHO05D004813 2.0e-25 118.2 58 96.6
COL.COLO4_16747 Corchorus olitorius HOM05D000929 ORTHO05D004813 2.7e-25 117.9 58 94.8
Eucgr.E01151 Eucalyptus grandis HOM05D000929 ORTHO05D004813 2.7e-25 117.9 58 96.6
Prupe.2G056200 Prunus persica HOM05D000929 ORTHO05D004813 2.7e-25 117.9 58 94.8
Thecc.03G320400 Theobroma cacao HOM05D000929 ORTHO05D004813 2.7e-25 117.9 58 94.8
MD02G1267100 Malus domestica HOM05D000929 ORTHO05D004813 3.5e-25 117.5 58 94.8
CiPaw.11G074100 Carya illinoinensis HOM05D000929 ORTHO05D004813 4.6e-25 117.1 58 94.8
Ca_22458_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004813 4.6e-25 117.1 58 94.8
Lalb_Chr09g0325051 Lupinus albus HOM05D000929 ORTHO05D004813 4.6e-25 117.1 58 93.1
CiPaw.12G055500 Carya illinoinensis HOM05D000929 ORTHO05D004813 5.9e-25 116.7 58 96.6
FAN04G0569 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.9e-25 116.7 58 96.6
THA.LOC104798531 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 5.9e-25 116.7 58 93.1
Duzib068G0752 Durio zibethinus HOM05D000929 ORTHO05D004813 7.8e-25 116.3 58 93.1
Lj4g0001871 Lotus japonicus HOM05D000929 ORTHO05D004813 7.8e-25 116.3 58 93.1
VMungo1215G3448 Vigna mungo HOM05D000929 ORTHO05D004813 7.8e-25 116.3 58 93.1
CSS0043960 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004813 1.3e-24 115.5 58 93.1
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 1.3e-24 115.5 58 93.1
arahy.Tifrunner.gnm1.ann1.C95Z0S Arachis hypogaea HOM05D000929 ORTHO05D004813 1.7e-24 115.2 58 91.4
arahy.Tifrunner.gnm1.ann1.HVM0CV Arachis hypogaea HOM05D000929 ORTHO05D004813 1.7e-24 115.2 58 91.4
Glyma.01G153200 Glycine max HOM05D000929 ORTHO05D004813 1.7e-24 115.2 57 93.0
Phvul.002G122300 Phaseolus vulgaris HOM05D000929 ORTHO05D004813 1.7e-24 115.2 58 91.4
TWI32G0464 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 1.7e-24 115.2 58 89.7
Haze_08424 Corylus avellana HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 96.6
Glyma.09G218500 Glycine max HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 91.4
Lalb_Chr16g0391781 Lupinus albus HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 91.4
Manes.17G001200 Manihot esculenta HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 89.7
Medtr8g072250 Medicago truncatula HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 93.1
THA.LOC104814388 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 93.1
TPR.G14264 Trifolium pratense HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 93.1
TAR362G0882 Trochodendron aralioides HOM05D000929 ORTHO05D004813 2.3e-24 114.8 58 91.4
TWI60G0350 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 3.0e-24 114.4 58 91.4
Dinv41800 Davidia involucrata HOM05D000929 ORTHO05D004813 5.0e-24 113.6 58 91.4
Duzib205G0211 Durio zibethinus HOM05D000929 ORTHO05D004813 5.0e-24 113.6 58 91.4
TAR636G3540 Trochodendron aralioides HOM05D000929 ORTHO05D004813 5.0e-24 113.6 58 91.4
MELO3C010526.2 Cucumis melo HOM05D000929 ORTHO05D004813 6.6e-24 113.2 58 91.4
Potri.004G235200 Populus trichocarpa HOM05D000929 ORTHO05D004813 6.6e-24 113.2 58 89.7
Actinidia01247 Actinidia chinensis HOM05D000929 ORTHO05D004813 1.1e-23 112.5 58 89.7
Lalb_Chr05g0215171 Lupinus albus HOM05D000929 ORTHO05D004813 1.1e-23 112.5 58 91.4
Rhsim11G0037600 Rhododendron simsii HOM05D000929 ORTHO05D004813 1.1e-23 112.5 58 89.7
vmacro00098 Vaccinium macrocarpon HOM05D000929 ORTHO05D004813 1.1e-23 112.5 58 89.7
Actinidia32793 Actinidia chinensis HOM05D000929 ORTHO05D004813 1.5e-23 112.1 58 91.4
Aa31LG9G15770 Aethionema arabicum HOM05D000929 ORTHO05D004813 1.5e-23 112.1 58 89.7
DCAR_004536 Daucus carota HOM05D000929 ORTHO05D004813 1.5e-23 112.1 58 89.7
Psat4g108000 Pisum sativum HOM05D000929 ORTHO05D004813 1.5e-23 112.1 58 91.4
Ah.02g115480 Amaranthus hybridus HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 91.4
ClCG11G016100 Citrullus lanatus HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 89.7
Gohir.A12G201100 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 91.4
Gohir.D12G203900 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 91.4
Gorai.008G218700 Gossypium raimondii HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 91.4
Prupe.2G018400 Prunus persica HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 91.4
Sed0024593 Sechium edule HOM05D000929 ORTHO05D004813 1.9e-23 111.7 58 89.7
ATR0069G035 Amborella trichopoda HOM05D000929 ORTHO05D004813 2.5e-23 111.3 58 89.7
MSTRG.25749 Avicennia marina HOM05D000929 ORTHO05D004813 2.5e-23 111.3 58 89.7
Cc08_g05960 Coffea canephora HOM05D000929 ORTHO05D004813 2.5e-23 111.3 58 89.7
CsaV3_4G014930 Cucumis sativus L. HOM05D000929 ORTHO05D004813 2.5e-23 111.3 58 89.7
Migut.A00470 Erythranthe guttata HOM05D000929 ORTHO05D004813 2.5e-23 111.3 58 89.7
EL10Ac5g12482 Beta vulgaris HOM05D000929 ORTHO05D004813 4.3e-23 110.5 58 89.7
Dinv37432 Davidia involucrata HOM05D000929 ORTHO05D004813 4.3e-23 110.5 58 87.9
PGR031G1573 Punica granatum HOM05D000929 ORTHO05D004813 4.3e-23 110.5 58 87.9
CANSAT35G1067 Cannabis sativa HOM05D000929 ORTHO05D004813 5.6e-23 110.2 58 86.2
Hma1.2p1_0262F.1_g105380 Hydrangea macrophylla HOM05D000929 ORTHO05D004813 5.6e-23 110.2 58 86.2
Lj8C361G1 Lonicera japonica HOM05D000929 ORTHO05D004813 5.6e-23 110.2 58 86.2
Sed0019322 Sechium edule HOM05D000929 ORTHO05D004813 7.3e-23 109.8 58 87.9
AUR62030759 Chenopodium quinoa HOM05D000929 ORTHO05D004813 9.5e-23 109.4 58 89.7
AUR62036405 Chenopodium quinoa HOM05D000929 ORTHO05D004813 9.5e-23 109.4 58 89.7
PSO017G4228 Papaver somniferum HOM05D000929 ORTHO05D004813 9.5e-23 109.4 58 87.9
PSO063G0460 Papaver somniferum HOM05D000929 ORTHO05D004813 9.5e-23 109.4 58 87.9
HanXRQChr03g0084681 Helianthus annuus HOM05D000929 ORTHO05D004813 1.2e-22 109.0 58 86.2
Oeu046773.1 Olea europaea HOM05D000929 ORTHO05D004813 1.2e-22 109.0 58 87.9
GSVIVG01036887001 Vitis vinifera HOM05D000929 ORTHO05D004813 1.2e-22 109.0 58 87.9
Nitab4.5_0000986g0030 Nicotiana tabacum HOM05D000929 ORTHO05D004813 1.6e-22 108.6 58 84.5
Nitab4.5_0007507g0010 Nicotiana tabacum HOM05D000929 ORTHO05D004813 1.6e-22 108.6 58 84.5
Peaxi162Scf00053g00316 Petunia axillaris HOM05D000929 ORTHO05D004813 1.6e-22 108.6 58 84.5
BcaB07g32818 Brassica carinata HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
BcaC05g26444 Brassica carinata HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
BcaC05g26656 Brassica carinata HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
A09p39530 Brassica napus HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
C05p24930 Brassica napus HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
BolC5t31222H Brassica oleracea HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
BraA09t39452Z Brassica rapa HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
Thhalv10006719m.g Eutrema salsugineum HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
Sp1g27400 Schrenkiella parvula HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 87.9
Hund10896 Selenicereus undatus HOM05D000929 ORTHO05D004813 2.1e-22 108.2 58 86.2
Aqoxy2G03914 Aquilegia oxysepala HOM05D000929 ORTHO05D004813 2.8e-22 107.8 58 87.9
HanXRQChr13g0412771 Helianthus annuus HOM05D000929 ORTHO05D004813 2.8e-22 107.8 58 84.5
Hund14936 Selenicereus undatus HOM05D000929 ORTHO05D004813 2.8e-22 107.8 58 87.9
AL1G45800 Arabidopsis lyrata HOM05D000929 ORTHO05D004813 3.6e-22 107.5 58 86.2
AT1G31730 Arabidopsis thaliana HOM05D000929 ORTHO05D004813 3.6e-22 107.5 58 86.2
Carub.0001s3003 Capsella rubella HOM05D000929 ORTHO05D004813 3.6e-22 107.5 58 86.2
CARHR031030 Cardamine hirsuta HOM05D000929 ORTHO05D004813 3.6e-22 107.5 58 86.2
BcaC05g27184 Brassica carinata HOM05D000929 ORTHO05D004813 4.7e-22 107.1 58 86.2
A09p34650 Brassica napus HOM05D000929 ORTHO05D004813 4.7e-22 107.1 58 86.2
BolC5t31815H Brassica oleracea HOM05D000929 ORTHO05D004813 4.7e-22 107.1 58 86.2
BraA09t38999Z Brassica rapa HOM05D000929 ORTHO05D004813 4.7e-22 107.1 58 86.2
Lsat_1_v5_gn_6_77000 Lactuca sativa HOM05D000929 ORTHO05D004813 6.2e-22 106.7 58 84.5
SalBow4G0955 Salvia bowleyana HOM05D000929 ORTHO05D004813 8.0e-22 106.3 58 84.5
HPP92_006225 Vanilla planifolia HOM05D000929 ORTHO05D004813 1.0e-21 105.9 58 81.0
Zm00001eb143480 Zea mays HOM05D000929 ORTHO05D004813 1.0e-21 105.9 58 82.8
CDE02G1294 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 1.4e-21 105.5 58 82.8
SGA_v2.0_scaffold96G29109 Striga asiatica HOM05D000929 ORTHO05D004813 1.4e-21 105.5 59 86.4
C05p30850 Brassica napus HOM05D000929 ORTHO05D004813 1.8e-21 105.1 58 84.5
Nn1g08153 Nelumbo nucifera HOM05D000929 ORTHO05D004813 1.8e-21 105.1 58 82.8
Sc22g0002840 Simmondsia chinensis HOM05D000929 ORTHO05D004813 1.8e-21 105.1 58 86.2
CAN.G998.9 Capsicum annuum HOM05D000929 ORTHO05D004813 2.3e-21 104.8 58 82.8
ECA240G1531 Erigeron canadensis HOM05D000929 ORTHO05D004813 2.3e-21 104.8 58 81.0
Solyc08g075310.4 Solanum lycopersicum HOM05D000929 ORTHO05D004813 2.3e-21 104.8 58 82.8
Sopen08g023910 Solanum pennellii HOM05D000929 ORTHO05D004813 2.3e-21 104.8 58 82.8
Oeu023056.3 Olea europaea HOM05D000929 ORTHO05D004813 3.1e-21 104.4 58 86.2
MSTRG.11858 Avicennia marina HOM05D000929 ORTHO05D004813 8.9e-21 102.8 55 87.3
Zm00001eb364820 Zea mays HOM05D000929 ORTHO05D004813 8.9e-21 102.8 58 79.3
Lsat_1_v5_gn_3_20441 Lactuca sativa HOM05D000929 ORTHO05D004813 1.5e-20 102.1 58 81.0
SEGI_31789 Sequoiadendron giganteum HOM05D000929 ORTHO05D004813 2.0e-20 101.7 58 81.0
Os01g0916200 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D004813 3.4e-20 100.9 58 79.3
CDE06G0186 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 4.4e-20 100.5 58 77.6
SHI32765 Sapria himalayana HOM05D000929 ORTHO05D004813 1.6e-17 92.0 52 76.9
Pp3c12_18560 Physcomitrium patens HOM05D000929 ORTHO05D004813 1.7e-16 88.6 58 69.0
CBR_g31532 Chara braunii HOM05D000929 ORTHO05D004813 2.3e-16 88.2 58 65.5
Pp3c12_14810 Physcomitrium patens HOM05D000929 ORTHO05D004813 2.3e-16 88.2 58 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3572 Anthoceros agrestis HOM05D000929 ORTHO05D004813 3.0e-16 87.8 58 67.2
Mapoly0011s0005 Marchantia polymorpha HOM05D000929 ORTHO05D004813 6.6e-16 86.7 58 69.0
Atru.chr8.2611 Acer truncatum HOM05D000929 ORTHO05D004813 4.3e-15 84.0 39 97.4
SMO117G0056 Selaginella moellendorffii HOM05D000929 ORTHO05D004813 3.1e-13 77.8 58 58.6
Atru.chr8.2597 Acer truncatum HOM05D000929 ORTHO05D030804 4.0e-13 77.4 58 69.0
CsaV3_UNG237520 Cucumis sativus L. HOM05D000929 ORTHO05D004813 3.5e-09 64.3 32 90.6
Ah.02g113380 Amaranthus hybridus HOM05D029726 ORTHO05D030804 3.3e-07 57.8 36 77.8
MCO16G352 Micromonas commoda HOM05D000929 ORTHO05D004813 8.1e-06 53.1 58 41.4


User provided reference genes

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