Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 5.0e-57 224.2 110 100.0
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 3.4e-45 184.9 109 81.7
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 2.2e-44 182.2 112 80.4
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 2.4e-43 178.7 109 78.9
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 3.2e-43 178.3 112 78.6
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 3.2e-43 178.3 108 79.6
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 1.6e-42 176.0 112 77.7
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.6e-42 176.0 109 78.9
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 6.0e-42 174.1 108 76.9
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 6.6e-41 170.6 109 77.1
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 8.6e-41 170.2 113 77.0
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 8.6e-41 170.2 109 78.9
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.5e-40 168.7 109 74.3
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 3.3e-40 168.3 107 78.5
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 3.3e-40 168.3 109 74.3
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.3e-40 168.3 109 73.4
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 3.3e-40 168.3 112 73.2
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 4.3e-40 167.9 112 75.0
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 4.3e-40 167.9 109 73.4
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 5.6e-40 167.5 111 75.7
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 5.6e-40 167.5 112 75.0
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 1.2e-39 166.4 109 74.3
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 1.2e-39 166.4 109 76.1
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.6e-39 166.0 112 75.9
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 1.6e-39 166.0 112 75.0
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.1e-39 165.6 109 73.4
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 3.6e-39 164.9 109 72.5
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 3.6e-39 164.9 112 74.1
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 8.0e-39 163.7 112 72.3
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 8.0e-39 163.7 106 71.7
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 1.1e-38 163.3 112 74.1
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 1.4e-38 162.9 109 72.5
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 1.4e-38 162.9 112 75.0
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 2.3e-38 162.2 110 72.7
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 2.3e-38 162.2 112 73.2
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 2.3e-38 162.2 109 71.6
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 3.1e-38 161.8 109 72.5
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 3.1e-38 161.8 109 75.2
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 4.0e-38 161.4 109 74.3
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 1.5e-37 159.5 112 72.3
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 2.0e-37 159.1 90 82.2
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 2.6e-37 158.7 93 76.3
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 4.4e-37 157.9 112 69.6
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 1.7e-36 156.0 109 69.7
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 1.7e-36 156.0 109 69.7
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 2.2e-36 155.6 110 70.9
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 2.2e-36 155.6 111 70.3
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.9e-36 155.2 101 78.2
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 3.7e-36 154.8 113 69.0
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.9e-36 154.5 101 77.2
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 4.9e-36 154.5 112 68.8
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 6.4e-36 154.1 101 72.3
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 6.4e-36 154.1 108 69.4
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 6.4e-36 154.1 109 70.6
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 1.1e-35 153.3 108 70.4
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 1.4e-35 152.9 109 68.8
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 1.4e-35 152.9 101 70.3
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 1.4e-35 152.9 107 70.1
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.4e-35 152.1 111 70.3
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 2.4e-35 152.1 109 65.1
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.2e-35 151.8 110 70.0
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 3.2e-35 151.8 110 70.0
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 3.2e-35 151.8 100 70.0
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.1e-35 151.4 110 69.1
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.1e-35 151.4 110 70.0
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 7.0e-35 150.6 108 69.4
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 7.0e-35 150.6 108 69.4
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 9.2e-35 150.2 102 71.6
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 9.2e-35 150.2 107 71.0
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 9.2e-35 150.2 111 64.9
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 9.2e-35 150.2 109 67.0
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 9.2e-35 150.2 109 68.8
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 1.2e-34 149.8 108 69.4
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 1.2e-34 149.8 108 69.4
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 1.2e-34 149.8 108 69.4
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 2.7e-34 148.7 107 69.2
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 3.5e-34 148.3 109 66.1
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 4.6e-34 147.9 87 77.0
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 1.3e-33 146.4 94 70.2
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 1.7e-33 146.0 112 66.1
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 2.3e-33 145.6 108 66.7
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 3.9e-33 144.8 109 67.9
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 3.9e-33 144.8 131 58.8
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 5.0e-33 144.4 93 72.0
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 6.6e-33 144.1 109 67.0
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 1.1e-32 143.3 111 68.5
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 1.5e-32 142.9 101 66.3
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 1.9e-32 142.5 109 66.1
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 4.3e-32 141.4 109 62.4
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 4.3e-32 141.4 111 62.2
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 5.6e-32 141.0 90 73.3
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 7.3e-32 140.6 109 60.6
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.2e-31 139.8 89 73.0
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 1.2e-31 139.8 74 85.1
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 1.2e-31 139.8 88 71.6
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 1.6e-31 139.4 109 65.1
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 1.4e-30 136.3 73 83.6
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.4e-30 136.3 110 62.7
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 8.9e-30 133.7 106 62.3
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 8.9e-30 133.7 109 61.5
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 1.5e-29 132.9 74 82.4
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 2.0e-29 132.5 73 82.2
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 7.5e-29 130.6 106 62.3
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 2.2e-28 129.0 112 61.6
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 4.9e-28 127.9 88 69.3
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 8.3e-28 127.1 91 68.1
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 1.1e-27 126.7 88 68.2
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.1e-27 126.7 89 66.3
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.1e-27 126.7 89 66.3
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 1.1e-27 126.7 88 69.3
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.4e-27 126.3 86 68.6
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 1.4e-27 126.3 88 67.0
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 2.4e-27 125.6 90 65.6
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 3.2e-27 125.2 88 67.0
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 3.2e-27 125.2 88 67.0
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 3.2e-27 125.2 93 64.5
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 4.1e-27 124.8 105 58.1
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 5.4e-27 124.4 112 58.0
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 9.2e-27 123.6 88 67.0
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 2.1e-26 122.5 88 67.0
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 6.0e-26 120.9 88 65.9
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 2.3e-25 119.0 88 65.9
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 8.6e-25 117.1 79 65.8
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 1.1e-24 116.7 97 60.8
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 9.5e-24 113.6 96 62.5
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 3.6e-23 111.7 82 63.4
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 1.4e-22 109.8 69 72.5
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 6.4e-20 100.9 74 58.1
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 4.6e-18 94.7 95 51.6
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 1.5e-16 89.7 73 68.5
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 8.1e-15 84.0 86 44.2
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 4.0e-14 81.6 85 43.5
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.0e-13 79.3 65 60.0
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 4.9e-12 74.7 38 92.1
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 2.1e-10 69.3 38 84.2
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 2.7e-10 68.9 71 43.7
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 7.8e-10 67.4 68 47.1
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 2.5e-08 62.4 40 72.5
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 3.3e-08 62.0 38 73.7
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 9.6e-08 60.5 39 64.1
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 3.6e-07 58.5 73 42.5


User provided reference genes

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