Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 1.2e-39 166.0 79 100.0
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 3.4e-23 111.3 55 90.9
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 4.4e-23 110.9 55 90.9
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 7.6e-23 110.2 55 87.3
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 7.6e-23 110.2 55 87.3
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 7.6e-23 110.2 55 90.9
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 7.6e-23 110.2 55 87.3
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 9.9e-23 109.8 55 87.3
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 9.9e-23 109.8 55 89.1
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 9.9e-23 109.8 55 90.9
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.3e-22 109.4 55 87.3
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 1.7e-22 109.0 55 89.1
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 1.7e-22 109.0 55 89.1
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.7e-22 109.0 55 87.3
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 1.7e-22 109.0 55 85.5
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.7e-22 109.0 55 87.3
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 2.2e-22 108.6 55 89.1
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.9e-22 108.2 55 87.3
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 2.9e-22 108.2 55 89.1
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.8e-22 107.8 55 89.1
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 3.8e-22 107.8 55 83.6
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 3.8e-22 107.8 55 87.3
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.8e-22 107.8 55 90.9
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 4.9e-22 107.5 55 83.6
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 6.4e-22 107.1 55 85.5
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 6.4e-22 107.1 66 77.3
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 1.1e-21 106.3 55 85.5
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.1e-21 106.3 66 74.2
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.1e-21 106.3 66 74.2
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 1.1e-21 106.3 55 83.6
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 1.4e-21 105.9 55 87.3
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.4e-21 105.9 55 83.6
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.9e-21 105.5 55 87.3
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 1.9e-21 105.5 55 83.6
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 2.4e-21 105.1 55 83.6
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.4e-21 105.1 55 81.8
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.4e-21 105.1 55 81.8
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 3.2e-21 104.8 55 83.6
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 3.2e-21 104.8 55 85.5
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 3.2e-21 104.8 55 83.6
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 4.2e-21 104.4 55 83.6
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 4.2e-21 104.4 55 83.6
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 4.2e-21 104.4 55 81.8
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 5.4e-21 104.0 55 81.8
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 5.4e-21 104.0 55 83.6
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 5.4e-21 104.0 55 80.0
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 7.1e-21 103.6 55 85.5
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 7.1e-21 103.6 55 81.8
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 7.1e-21 103.6 55 81.8
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 7.1e-21 103.6 54 87.0
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 9.3e-21 103.2 55 80.0
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.2e-20 102.8 55 80.0
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.2e-20 102.8 55 80.0
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.2e-20 102.8 55 81.8
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.6e-20 102.4 55 80.0
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.6e-20 102.4 55 80.0
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 1.6e-20 102.4 55 78.2
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 2.1e-20 102.1 54 83.3
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 2.1e-20 102.1 55 80.0
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.1e-20 102.1 55 80.0
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.1e-20 102.1 55 80.0
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.1e-20 102.1 55 80.0
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 2.1e-20 102.1 55 80.0
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 2.7e-20 101.7 55 81.8
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 3.5e-20 101.3 54 79.6
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 3.5e-20 101.3 55 80.0
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 3.5e-20 101.3 55 80.0
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 4.6e-20 100.9 55 80.0
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 6.0e-20 100.5 54 79.6
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 6.0e-20 100.5 73 64.4
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 6.0e-20 100.5 55 81.8
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 7.8e-20 100.1 55 81.8
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 7.8e-20 100.1 55 81.8
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 7.8e-20 100.1 54 79.6
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 7.8e-20 100.1 55 80.0
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 1.0e-19 99.8 55 80.0
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 5.1e-19 97.4 62 74.2
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 8.7e-19 96.7 55 76.4
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 8.7e-19 96.7 55 76.4
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 1.5e-18 95.9 67 68.7
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 3.3e-18 94.7 75 61.3
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 4.3e-18 94.4 55 70.9
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 4.3e-18 94.4 55 76.4
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 7.3e-18 93.6 55 76.4
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 9.6e-18 93.2 55 76.4
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 9.6e-18 93.2 55 74.5
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 9.6e-18 93.2 63 69.8
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.3e-17 92.8 76 63.2
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 1.6e-17 92.4 85 55.3
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 6.2e-17 90.5 51 76.5
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 8.1e-17 90.1 59 71.2
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.4e-16 88.6 45 86.7
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 5.3e-16 87.4 55 69.1
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 6.9e-16 87.0 55 67.3
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.2e-15 86.3 55 67.3
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 4.9e-14 80.9 72 56.9
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 8.4e-14 80.1 54 63.0
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 1.4e-13 79.3 50 68.0
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 1.0e-11 73.2 50 62.0
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 1.8e-11 72.4 50 62.0
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 3.7e-09 64.7 55 61.8
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 3.7e-09 64.7 55 56.4
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 8.1e-09 63.5 55 58.2
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.3e-08 60.8 55 58.2
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 3.4e-07 58.2 28 85.7


User provided reference genes

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