Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.5e-62 243.0 154 100.0
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.5e-62 243.0 154 100.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.9e-19 97.4 152 43.4
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.2e-18 96.3 152 42.1
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.9e-18 95.9 152 41.4
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.1e-17 94.0 152 48.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 4.6e-16 88.6 152 45.4
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-15 87.0 152 44.7
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.7e-15 86.7 152 46.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.3e-15 86.3 171 38.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.5e-14 82.8 154 40.9
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.5e-14 82.8 154 40.9
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 4.3e-14 82.0 154 40.3
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 9.6e-14 80.9 151 41.1
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.3e-13 80.5 153 39.2
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.3e-13 80.5 148 46.6
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.3e-13 80.5 154 45.5
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-13 80.5 154 42.9
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.1e-13 79.7 149 42.3
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 6.2e-13 78.2 152 38.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 6.2e-13 78.2 149 43.0
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.4e-12 77.0 154 39.6
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.1e-12 75.9 149 42.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 5.3e-12 75.1 154 42.9
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 6.9e-12 74.7 157 42.7
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 6.9e-12 74.7 157 42.7
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 6.9e-12 74.7 157 42.7
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 6.9e-12 74.7 162 38.9
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 9.0e-12 74.3 156 41.0
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 9.0e-12 74.3 156 41.0
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 9.0e-12 74.3 156 41.0
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 9.0e-12 74.3 154 37.7
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-11 73.9 156 41.0
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-11 73.9 165 37.6
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.2e-11 73.9 156 41.0
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.2e-11 73.9 165 37.6
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.0e-11 73.2 157 42.0
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.0e-11 73.2 163 36.2
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.6e-11 72.8 161 43.5
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.5e-11 72.0 155 39.4
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 5.8e-11 71.6 154 34.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.8e-11 71.6 164 45.7
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 7.6e-11 71.2 149 35.6
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.6e-11 71.2 148 35.1
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.3e-10 70.5 164 43.3
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.3e-10 70.5 154 40.3
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.3e-10 70.5 159 40.3
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.8e-10 68.9 154 36.4
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.9e-10 68.6 155 39.4
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 6.4e-10 68.2 148 41.9
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 8.4e-10 67.8 154 37.7
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.1e-09 67.4 168 35.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.4e-09 67.0 178 33.1
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.9e-09 66.6 164 41.5
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.9e-09 66.6 148 38.5
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 1.9e-09 66.6 168 39.9
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.4e-09 66.2 149 32.2
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.2e-09 65.9 157 41.4
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 5.5e-09 65.1 154 42.9
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 5.5e-09 65.1 155 32.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 5.5e-09 65.1 150 34.7
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.1e-09 64.7 154 33.1
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 9.3e-09 64.3 168 39.3
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 9.3e-09 64.3 151 33.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.2e-08 63.9 154 35.7
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.2e-08 63.9 158 46.2
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-08 63.9 150 42.7
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-08 63.9 158 46.2
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.6e-08 63.5 47 66.0
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-08 63.2 157 43.3
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-08 63.2 157 43.3
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.1e-08 63.2 159 40.3
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.5e-08 62.4 150 36.7
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.5e-08 62.4 166 37.3
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.5e-08 62.4 157 39.5
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 3.5e-08 62.4 149 31.5
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.6e-08 62.0 155 40.0
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 6.0e-08 61.6 154 35.1
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 7.9e-08 61.2 162 42.0
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 7.9e-08 61.2 148 39.9
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 7.9e-08 61.2 149 32.2
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.0e-07 60.8 149 32.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.0e-07 60.8 153 43.1
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.0e-07 60.8 149 32.2
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.0e-07 60.8 158 43.0
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.0e-07 60.8 43 74.4
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.3e-07 60.5 149 43.0
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.8e-07 60.1 151 35.8
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.3e-07 59.7 40 80.0
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.3e-07 59.7 150 30.7
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 3.0e-07 59.3 152 37.5
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.0e-07 59.3 153 39.2
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 3.9e-07 58.9 150 32.7
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.9e-07 58.9 42 69.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.9e-07 58.9 149 38.3
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.1e-07 58.5 169 35.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 6.7e-07 58.2 169 38.5
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.1e-06 57.4 180 36.7
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.1e-06 57.4 154 35.7
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.5e-06 57.0 154 29.9
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.9e-06 56.6 38 76.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.9e-06 56.6 164 31.1
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.3e-06 55.8 151 31.1
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.3e-06 55.5 170 37.6
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 4.3e-06 55.5 150 40.7
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 4.3e-06 55.5 40 72.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 7.4e-06 54.7 156 36.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 7.4e-06 54.7 156 36.5
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 7.4e-06 54.7 166 36.7
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.6e-06 54.3 44 61.4


User provided reference genes

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