Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 4.8e-38 160.6 77 100.0
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 3.5e-25 117.9 76 73.7
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 8.7e-24 113.2 72 72.2
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 8.7e-24 113.2 78 70.5
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 3.3e-23 111.3 75 70.7
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 4.3e-23 110.9 78 71.8
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 4.3e-23 110.9 75 70.7
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 9.6e-23 109.8 75 69.3
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 9.6e-23 109.8 75 68.0
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.3e-22 109.4 75 69.3
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 1.3e-22 109.4 75 70.7
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 1.6e-22 109.0 78 70.5
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 1.6e-22 109.0 78 70.5
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 2.1e-22 108.6 72 70.8
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 2.8e-22 108.2 78 66.7
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 2.8e-22 108.2 78 70.5
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 3.7e-22 107.8 77 70.1
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 3.7e-22 107.8 77 70.1
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 3.7e-22 107.8 77 70.1
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 6.3e-22 107.1 78 69.2
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 8.2e-22 106.7 79 68.4
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 1.1e-21 106.3 79 67.1
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.4e-21 105.9 77 68.8
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 1.8e-21 105.5 76 64.5
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 5.3e-21 104.0 77 66.2
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 5.3e-21 104.0 77 63.6
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 9.0e-21 103.2 77 66.2
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 2.6e-20 101.7 77 64.9
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 7.6e-20 100.1 80 60.0
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.0e-19 99.8 77 62.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 1.0e-19 99.8 76 56.6
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.7e-19 99.0 79 54.4
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 2.9e-19 98.2 77 54.5
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 6.5e-19 97.1 78 61.5
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 1.1e-18 96.3 79 65.8
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 1.4e-18 95.9 79 63.3
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 1.4e-18 95.9 79 67.1
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 1.9e-18 95.5 74 55.4
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.9e-18 95.5 74 55.4
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 4.2e-18 94.4 77 62.3
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 5.5e-18 94.0 76 59.2
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 7.2e-18 93.6 81 56.8
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 7.2e-18 93.6 80 62.5
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 2.7e-17 91.7 76 57.9
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 3.6e-17 91.3 77 59.7
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 4.6e-17 90.9 76 57.9
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 6.1e-17 90.5 77 59.7
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 6.1e-17 90.5 72 62.5
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 1.3e-16 89.4 77 59.7
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 1.3e-16 89.4 72 56.9
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 2.3e-16 88.6 77 55.8
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 5.1e-16 87.4 76 55.3
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 5.1e-16 87.4 82 57.3
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 6.7e-16 87.0 77 54.5
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 8.7e-16 86.7 78 57.7
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 8.7e-16 86.7 78 57.7
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 8.7e-16 86.7 75 58.7
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 1.5e-15 85.9 72 55.6
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 1.9e-15 85.5 74 55.4
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 1.9e-15 85.5 72 54.2
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 2.5e-15 85.1 76 59.2
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.5e-15 85.1 76 59.2
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.5e-15 85.1 76 59.2
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.5e-15 85.1 76 59.2
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 2.5e-15 85.1 72 54.2
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 3.3e-15 84.7 73 57.5
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 4.3e-15 84.3 72 55.6
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.3e-15 84.3 76 57.9
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 4.3e-15 84.3 76 59.2
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 7.4e-15 83.6 77 58.4
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 9.7e-15 83.2 80 53.8
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 9.7e-15 83.2 74 58.1
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 1.3e-14 82.8 80 53.8
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.3e-14 82.8 77 57.1
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.8e-14 81.6 76 57.9
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.8e-14 81.6 76 57.9
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 4.8e-14 80.9 72 55.6
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 4.8e-14 80.9 73 56.2
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 6.3e-14 80.5 54 61.1
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 8.2e-14 80.1 77 58.4
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 1.1e-13 79.7 81 49.4
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.1e-13 79.7 72 52.8
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 2.4e-13 78.6 79 51.9
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 4.1e-13 77.8 81 55.6
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 4.1e-13 77.8 72 56.9
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 5.3e-13 77.4 77 58.4
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 6.9e-13 77.0 77 49.4
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 6.9e-13 77.0 53 60.4
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 6.9e-13 77.0 53 60.4
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 1.2e-12 76.3 72 51.4
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 1.5e-12 75.9 71 52.1
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.5e-12 75.9 77 54.5
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 2.6e-12 75.1 80 47.5
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 3.4e-12 74.7 80 47.5
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 3.4e-12 74.7 72 48.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 5.9e-12 73.9 77 46.8
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 1.0e-11 73.2 51 70.6
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 3.8e-11 71.2 88 44.3
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 3.8e-11 71.2 74 51.4
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 8.5e-11 70.1 72 48.6
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 2.5e-10 68.6 51 62.7
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 6.1e-09 63.9 49 67.3
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 7.9e-09 63.5 52 55.8
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 2.0e-07 58.9 72 44.4
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 2.8e-06 55.1 55 47.3
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 2.8e-06 55.1 45 64.4


User provided reference genes

Program Settings