Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44337.1 Carica papaya HOM05D002502 ORTHO05D017711 1.1e-20 102.8 69 100.0
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 6.0e-16 87.0 69 88.4
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 6.0e-16 87.0 69 88.4
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 7.8e-16 86.7 67 85.1
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 8.7e-15 83.2 69 87.0
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 2.5e-14 81.6 69 84.1
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 3.3e-14 81.3 69 84.1
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 4.3e-14 80.9 69 84.1
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 4.3e-14 80.9 69 68.1
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 7.3e-14 80.1 43 95.3
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 9.6e-14 79.7 69 87.0
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 9.6e-14 79.7 69 68.1
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 9.6e-14 79.7 69 66.7
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 1.3e-13 79.3 43 95.3
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 2.1e-13 78.6 69 82.6
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 2.1e-13 78.6 43 95.3
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 3.6e-13 77.8 43 93.0
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 6.2e-13 77.0 69 71.0
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 6.2e-13 77.0 69 63.8
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 6.2e-13 77.0 69 66.7
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 8.1e-13 76.6 70 68.6
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 8.1e-13 76.6 43 90.7
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 1.1e-12 76.3 43 93.0
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 1.1e-12 76.3 43 93.0
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 1.1e-12 76.3 43 93.0
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.1e-12 76.3 42 92.9
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 1.1e-12 76.3 72 65.3
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 1.4e-12 75.9 42 95.2
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.4e-12 75.9 69 72.5
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 1.4e-12 75.9 43 90.7
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 1.8e-12 75.5 69 75.4
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 2.4e-12 75.1 43 88.4
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 2.4e-12 75.1 43 88.4
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 2.4e-12 75.1 43 93.0
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 3.1e-12 74.7 69 78.3
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 3.1e-12 74.7 69 78.3
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 3.1e-12 74.7 42 90.5
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 3.1e-12 74.7 43 88.4
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 3.1e-12 74.7 69 62.3
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 4.0e-12 74.3 43 88.4
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 4.0e-12 74.3 43 88.4
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 4.0e-12 74.3 43 86.0
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 5.3e-12 73.9 43 90.7
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 9.0e-12 73.2 43 86.0
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 9.0e-12 73.2 69 81.2
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 9.0e-12 73.2 70 61.4
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.2e-11 72.8 69 59.4
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 1.2e-11 72.8 43 88.4
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 1.2e-11 72.8 43 88.4
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 1.2e-11 72.8 43 88.4
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 1.5e-11 72.4 43 86.0
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 1.5e-11 72.4 69 84.1
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 1.5e-11 72.4 42 88.1
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 1.5e-11 72.4 43 83.7
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 2.6e-11 71.6 42 85.7
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 2.6e-11 71.6 69 71.0
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 2.6e-11 71.6 69 71.0
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 2.6e-11 71.6 43 88.4
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.4e-11 71.2 43 83.7
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.4e-11 71.2 43 83.7
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 3.4e-11 71.2 43 83.7
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 3.4e-11 71.2 43 88.4
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 3.4e-11 71.2 67 59.7
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 4.5e-11 70.9 42 88.1
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 4.5e-11 70.9 43 86.0
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 5.8e-11 70.5 43 86.0
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 5.8e-11 70.5 43 79.1
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 9.9e-11 69.7 43 86.0
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.3e-10 69.3 42 85.7
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 1.3e-10 69.3 70 61.4
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 1.3e-10 69.3 72 56.9
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 1.7e-10 68.9 42 85.7
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 1.7e-10 68.9 69 58.0
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 1.7e-10 68.9 69 58.0
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 1.7e-10 68.9 43 83.7
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 2.2e-10 68.6 68 55.9
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 2.9e-10 68.2 69 58.0
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.9e-10 68.2 43 81.4
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.9e-10 68.2 43 81.4
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 3.8e-10 67.8 38 94.7
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 4.9e-10 67.4 43 81.4
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 4.9e-10 67.4 43 81.4
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 4.9e-10 67.4 43 81.4
Ca_01773_v3 Cicer arietinum L. HOM05D002502 ORTHO05D017711 6.4e-10 67.0 43 79.1
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 6.4e-10 67.0 42 83.3
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 8.4e-10 66.6 70 58.6
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 1.1e-09 66.2 69 58.0
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 1.1e-09 66.2 42 81.0
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.4e-09 65.9 43 81.4
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 1.4e-09 65.9 42 76.2
Lj5g0005383 Lotus japonicus HOM05D002502 ORTHO05D017711 1.4e-09 65.9 39 87.2
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 1.4e-09 65.9 43 81.4
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 1.9e-09 65.5 43 79.1
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.9e-09 65.5 42 78.6
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 1.9e-09 65.5 43 74.4
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 3.2e-09 64.7 43 79.1
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 3.2e-09 64.7 42 81.0
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 3.2e-09 64.7 43 74.4
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 4.2e-09 64.3 43 74.4
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 4.2e-09 64.3 37 94.6
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 5.4e-09 63.9 42 81.0
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 5.4e-09 63.9 73 75.3
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 7.1e-09 63.5 70 61.4
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 7.1e-09 63.5 61 62.3
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 7.1e-09 63.5 61 62.3
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 7.1e-09 63.5 42 81.0
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 9.3e-09 63.2 43 72.1
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 9.3e-09 63.2 66 57.6
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 9.3e-09 63.2 66 57.6
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 9.3e-09 63.2 35 97.1
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 9.3e-09 63.2 43 72.1
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 9.3e-09 63.2 74 54.1
Medtr2g082240 Medicago truncatula HOM05D002502 ORTHO05D017711 9.3e-09 63.2 66 56.1
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 9.3e-09 63.2 43 76.7
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 9.3e-09 63.2 43 74.4
TPR.G36771 Trifolium pratense HOM05D002502 ORTHO05D017711 9.3e-09 63.2 73 53.4
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.2e-08 62.8 69 65.2
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 1.2e-08 62.8 69 53.6
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 1.6e-08 62.4 41 78.0
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 1.6e-08 62.4 41 78.0
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.6e-08 62.4 44 77.3
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 1.6e-08 62.4 68 54.4
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 2.1e-08 62.0 73 68.5
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 2.1e-08 62.0 42 76.2
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 2.7e-08 61.6 71 54.9
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.7e-08 61.6 42 76.2
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.7e-08 61.6 42 76.2
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 2.7e-08 61.6 42 76.2
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 2.7e-08 61.6 70 64.3
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 3.5e-08 61.2 73 67.1
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 3.5e-08 61.2 70 70.0
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 3.5e-08 61.2 43 72.1
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 4.6e-08 60.8 73 64.4
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 4.6e-08 60.8 44 77.3
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 4.6e-08 60.8 42 78.6
Sed0022998 Sechium edule HOM05D002502 ORTHO05D003592 4.6e-08 60.8 56 80.4
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 4.6e-08 60.8 70 62.9
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 4.6e-08 60.8 70 61.4
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 4.6e-08 60.8 41 75.6
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 6.0e-08 60.5 43 74.4
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 6.0e-08 60.5 69 72.5
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 7.9e-08 60.1 42 73.8
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 1.3e-07 59.3 68 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 1.8e-07 58.9 42 69.0
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 2.3e-07 58.5 42 76.2
PGSC0003DMG400030186 Solanum tuberosum HOM05D002502 ORTHO05D017711 2.3e-07 58.5 43 72.1
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 3.0e-07 58.2 44 72.7
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.9e-07 57.8 43 74.4
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 5.1e-07 57.4 44 68.2
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 5.1e-07 57.4 44 70.5
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 5.1e-07 57.4 70 60.0
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 5.1e-07 57.4 70 60.0
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 5.1e-07 57.4 41 70.7
BraA06t23215Z Brassica rapa HOM05D002502 ORTHO05D017711 6.7e-07 57.0 72 52.8
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 6.7e-07 57.0 43 72.1
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 8.7e-07 56.6 38 76.3
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 1.1e-06 56.2 44 70.5
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 1.1e-06 56.2 44 70.5
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 1.1e-06 56.2 44 70.5
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 1.1e-06 56.2 38 73.7
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 1.1e-06 56.2 44 70.5
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 1.5e-06 55.8 44 70.5
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 1.5e-06 55.8 44 70.5
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 1.5e-06 55.8 44 70.5
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 1.5e-06 55.8 44 70.5
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 1.5e-06 55.8 44 70.5
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 1.5e-06 55.8 43 72.1
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.5e-06 55.8 43 72.1
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 1.5e-06 55.8 40 70.0
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 4.3e-06 54.3 38 71.1
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 7.4e-06 53.5 43 69.8


User provided reference genes

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