Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44271 Carica papaya HOM05D003116 ORTHO05D003619 1.3e-38 162.5 80 100.0
Cpa.g.sc123.20 Carica papaya HOM05D003116 ORTHO05D003619 9.7e-34 146.4 76 96.1
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 4.3e-26 120.9 71 81.7
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 1.1e-24 116.3 71 77.5
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 1.1e-24 116.3 71 77.5
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 1.8e-24 115.5 70 77.1
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 1.8e-24 115.5 70 75.7
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.8e-24 115.5 71 76.1
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.8e-24 115.5 71 76.1
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 1.8e-24 115.5 70 77.1
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 3.1e-24 114.8 71 76.1
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 3.1e-24 114.8 70 77.1
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 3.1e-24 114.8 70 78.6
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 4.1e-24 114.4 71 76.1
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 4.1e-24 114.4 70 75.7
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 5.3e-24 114.0 70 80.0
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 6.9e-24 113.6 70 77.1
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 9.1e-24 113.2 70 75.7
Sc25g0001710 Simmondsia chinensis HOM05D003116 ORTHO05D003619 9.1e-24 113.2 70 78.6
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 1.2e-23 112.8 70 78.6
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 1.2e-23 112.8 70 78.6
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 2.0e-23 112.1 70 72.9
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 2.0e-23 112.1 70 72.9
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 2.0e-23 112.1 70 75.7
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 2.0e-23 112.1 70 78.6
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 2.6e-23 111.7 70 75.7
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 2.6e-23 111.7 70 72.9
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 2.6e-23 111.7 70 75.7
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 3.4e-23 111.3 70 75.7
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 3.4e-23 111.3 71 74.6
Cc02_g09220 Coffea canephora HOM05D003116 ORTHO05D003619 4.5e-23 110.9 70 74.3
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 5.9e-23 110.5 70 78.6
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 5.9e-23 110.5 71 73.2
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 1.0e-22 109.8 70 74.3
Dinv36343 Davidia involucrata HOM05D003116 ORTHO05D003619 1.0e-22 109.8 70 77.1
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 1.3e-22 109.4 70 72.9
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 1.3e-22 109.4 70 74.3
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 2.2e-22 108.6 70 74.3
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.2e-22 108.6 70 77.1
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.2e-22 108.6 70 77.1
arahy.Tifrunner.gnm1.ann1.I49W7B Arachis hypogaea HOM05D003116 ORTHO05D003619 2.2e-22 108.6 70 77.1
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea HOM05D003116 ORTHO05D003619 2.2e-22 108.6 70 77.1
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 2.9e-22 108.2 70 72.9
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 2.9e-22 108.2 70 72.9
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 3.8e-22 107.8 70 67.1
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-22 107.8 69 72.5
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.8e-22 107.8 69 72.5
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 3.8e-22 107.8 70 72.9
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 5.0e-22 107.5 70 70.0
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 5.0e-22 107.5 70 70.0
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 8.5e-22 106.7 70 72.9
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 8.5e-22 106.7 69 71.0
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 8.5e-22 106.7 69 71.0
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 8.5e-22 106.7 71 69.0
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 8.5e-22 106.7 71 71.8
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 1.1e-21 106.3 70 68.6
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 1.1e-21 106.3 70 68.6
Ciclev10013675m.g Citrus clementina HOM05D003116 ORTHO05D003619 1.1e-21 106.3 70 72.9
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 1.1e-21 106.3 70 72.9
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 1.1e-21 106.3 70 71.4
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 1.4e-21 105.9 70 70.0
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 1.4e-21 105.9 70 70.0
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 1.4e-21 105.9 70 71.4
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.9e-21 105.5 70 70.0
TPR.G14663 Trifolium pratense HOM05D003116 ORTHO05D003619 1.9e-21 105.5 71 67.6
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 2.5e-21 105.1 70 71.4
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 2.5e-21 105.1 70 68.6
CDE02G2540 Ceratophyllum demersum HOM05D003116 ORTHO05D003619 2.5e-21 105.1 72 70.8
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 2.5e-21 105.1 71 67.6
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 3.2e-21 104.8 70 71.4
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 3.2e-21 104.8 70 64.3
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 3.2e-21 104.8 70 68.6
CsaV3_2G010350 Cucumis sativus L. HOM05D003116 ORTHO05D003619 3.2e-21 104.8 70 71.4
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 3.2e-21 104.8 69 68.1
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 3.2e-21 104.8 70 74.3
A01p18940 Brassica napus HOM05D003116 ORTHO05D003619 4.2e-21 104.4 70 68.6
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 4.2e-21 104.4 70 68.6
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 4.2e-21 104.4 70 70.0
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 4.2e-21 104.4 70 72.9
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 4.2e-21 104.4 70 68.6
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 5.5e-21 104.0 70 68.6
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 5.5e-21 104.0 70 68.6
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 5.5e-21 104.0 70 74.3
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 7.2e-21 103.6 71 67.6
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 9.4e-21 103.2 70 67.1
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 9.4e-21 103.2 70 71.4
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 1.2e-20 102.8 71 70.4
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 1.2e-20 102.8 70 67.1
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 1.2e-20 102.8 70 68.6
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 2.1e-20 102.1 70 70.0
Sabra05G0155200 Salix brachista HOM05D003116 ORTHO05D003619 2.7e-20 101.7 70 72.9
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 2.7e-20 101.7 70 72.9
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 3.6e-20 101.3 70 71.4
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 3.6e-20 101.3 70 71.4
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 4.7e-20 100.9 70 72.9
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 6.1e-20 100.5 71 67.6
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 7.9e-20 100.1 70 70.0
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 7.9e-20 100.1 71 62.0
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.4e-19 99.4 70 67.1
DCAR_023104 Daucus carota HOM05D003116 ORTHO05D003619 1.4e-19 99.4 71 64.8
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 1.8e-19 99.0 73 65.8
COL.COLO4_06645 Corchorus olitorius HOM05D003116 ORTHO05D003619 3.9e-19 97.8 71 67.6
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 6.7e-19 97.1 71 63.4
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 8.8e-19 96.7 71 62.0
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 8.8e-19 96.7 70 61.4
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 2.6e-18 95.1 71 63.4
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 7.4e-18 93.6 87 55.2
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 7.4e-18 93.6 70 61.4
C01p23890 Brassica napus HOM05D003116 ORTHO05D003619 1.7e-17 92.4 72 62.5
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 1.7e-17 92.4 74 62.2
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 3.7e-17 91.3 70 61.4
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 6.3e-17 90.5 70 54.3
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 6.3e-17 90.5 70 61.4
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 2.4e-16 88.6 55 76.4
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 3.1e-16 88.2 69 63.8
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 3.1e-16 88.2 62 64.5
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 4.1e-16 87.8 70 54.3
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 2.0e-15 85.5 70 54.3
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 4.5e-15 84.3 54 72.2
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 1.0e-14 83.2 73 54.8
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 2.2e-14 82.0 71 53.5
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 3.8e-14 81.3 79 45.6
RcHm_v2.0_Chr4g0442151 Rosa chinensis HOM05D003116 ORTHO05D003619 5.0e-14 80.9 70 54.3
Actinidia29561 Actinidia chinensis HOM05D003116 ORTHO05D003619 8.5e-14 80.1 60 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.1e-13 79.7 71 52.1
Pp3c4_11130 Physcomitrium patens HOM05D003116 ORTHO05D003619 5.5e-13 77.4 57 57.9
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.6e-12 74.7 70 51.4
BcaC07g37718 Brassica carinata HOM05D003116 ORTHO05D003619 8.0e-12 73.6 56 60.7
A08p10310 Brassica napus HOM05D003116 ORTHO05D003619 8.0e-12 73.6 56 60.7
BraA08t33029Z Brassica rapa HOM05D003116 ORTHO05D003619 8.0e-12 73.6 56 60.7
BraA08t33030Z Brassica rapa HOM05D003116 ORTHO05D003619 8.0e-12 73.6 56 60.7
BcaB04g18111 Brassica carinata HOM05D003116 ORTHO05D003619 1.0e-11 73.2 69 52.2
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 1.8e-11 72.4 69 47.8
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.8e-11 72.4 70 50.0
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.8e-11 72.4 70 50.0
BolC8t48097H Brassica oleracea HOM05D003116 ORTHO05D003619 2.3e-11 72.0 56 58.9
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 3.0e-11 71.6 81 42.0
TAR636G2277 Trochodendron aralioides HOM05D003116 ORTHO05D003619 3.0e-11 71.6 70 50.0
Actinidia39860 Actinidia chinensis HOM05D003116 ORTHO05D003619 5.2e-11 70.9 70 47.1
Nitab4.5_0000132g0470 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.5e-10 69.3 69 46.4
Atru.chr8.1701 Acer truncatum HOM05D003116 ORTHO05D003619 2.0e-10 68.9 72 45.8
AT3G58390 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 3.3e-10 68.2 64 51.6
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 4.4e-10 67.8 72 44.4
Haze_27288 Corylus avellana HOM05D003116 ORTHO05D003619 9.7e-10 66.6 70 42.9
FAN07G2794 Fragaria x ananassa HOM05D003116 ORTHO05D003619 9.7e-10 66.6 70 44.3
FAN12G0407 Fragaria x ananassa HOM05D003116 ORTHO05D003619 9.7e-10 66.6 70 44.3
FAN22G1543 Fragaria x ananassa HOM05D003116 ORTHO05D003619 9.7e-10 66.6 70 44.3
FvH4_4g33100 Fragaria vesca HOM05D003116 ORTHO05D003619 2.2e-09 65.5 70 42.9
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 6.3e-09 63.9 69 42.0
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 6.3e-09 63.9 69 43.5
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 8.2e-09 63.5 69 44.9
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.1e-08 63.2 69 42.0
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 1.1e-08 63.2 69 40.6
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 1.4e-08 62.8 70 42.9
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 1.4e-08 62.8 72 43.1
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 1.8e-08 62.4 70 44.3
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 2.4e-08 62.0 69 40.6
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 3.1e-08 61.6 69 40.6
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 3.1e-08 61.6 70 47.1
PRCOL_00002239 Prasinoderma coloniale HOM05D003116 ORTHO05D003619 3.1e-08 61.6 70 40.0
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 4.1e-08 61.2 70 47.1
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 5.3e-08 60.8 70 42.9
FAN05G2101 Fragaria x ananassa HOM05D003116 ORTHO05D003619 7.0e-08 60.5 67 38.8
Sp7g11900 Schrenkiella parvula HOM05D003116 ORTHO05D003619 7.0e-08 60.5 53 54.7
VMungo1215G3224 Vigna mungo HOM05D003116 ORTHO05D002049 7.0e-08 60.5 46 67.4
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 1.6e-07 59.3 67 38.8
FAN05G5198 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.6e-07 59.3 67 37.3
arahy.Tifrunner.gnm1.ann1.9H48GU Arachis hypogaea HOM05D003116 ORTHO05D085597 2.0e-07 58.9 70 41.4
arahy.Tifrunner.gnm1.ann1.UXIK5Z Arachis hypogaea HOM05D003116 ORTHO05D003619 5.9e-07 57.4 70 40.0
COL.COLO4_11895 Corchorus olitorius HOM05D003116 ORTHO05D003619 7.7e-07 57.0 85 40.0
MCO02G454 Micromonas commoda HOM05D003116 ORTHO05D003619 7.7e-07 57.0 57 45.6
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 1.0e-06 56.6 70 40.0
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 2.2e-06 55.5 54 44.4
AUR62031139 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.9e-06 55.1 34 67.6
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 3.8e-06 54.7 82 36.6
PGSC0003DMG400028274 Solanum tuberosum HOM05D003116 ORTHO05D003619 5.0e-06 54.3 84 35.7


User provided reference genes

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