Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 7.4e-92 340.5 169 100.0
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 2.0e-65 252.7 161 74.5
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 2.1e-54 216.1 161 64.6
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 1.2e-52 210.3 161 64.0
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 4.4e-52 208.4 161 62.7
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 5.3e-50 201.4 161 60.9
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 5.3e-50 201.4 161 60.9
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 9.1e-50 200.7 161 62.7
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 4.5e-49 198.4 161 60.2
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 5.9e-49 198.0 161 60.2
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 1.7e-48 196.4 161 62.1
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 5.0e-48 194.9 161 59.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 2.5e-47 192.6 161 61.5
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 7.2e-47 191.0 161 60.9
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 6.1e-46 188.0 161 59.0
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 1.0e-45 187.2 157 59.2
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 1.0e-45 187.2 126 71.4
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 6.8e-45 184.5 161 55.9
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 6.8e-45 184.5 161 55.9
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 4.4e-44 181.8 161 59.0
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 7.5e-44 181.0 162 58.0
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 1.4e-42 176.8 161 58.4
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 3.1e-42 175.6 161 57.1
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 2.7e-41 172.6 160 58.1
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 2.7e-41 172.6 160 58.1
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 2.7e-41 172.6 161 58.4
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 1.0e-40 170.6 161 55.9
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 2.9e-40 169.1 161 57.1
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 8.6e-40 167.5 161 55.9
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 8.6e-40 167.5 161 54.0
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 8.6e-40 167.5 161 54.7
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 1.5e-39 166.8 161 55.3
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 1.9e-39 166.4 128 65.6
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 2.5e-39 166.0 162 57.4
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 2.5e-39 166.0 161 52.2
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 4.2e-39 165.2 161 53.4
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 4.2e-39 165.2 161 55.3
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 5.5e-39 164.9 161 53.4
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 7.2e-39 164.5 161 52.2
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 9.5e-39 164.1 181 49.7
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 1.6e-38 163.3 161 52.8
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.6e-38 163.3 161 52.8
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 2.8e-38 162.5 161 54.7
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 3.6e-38 162.2 161 54.7
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 3.6e-38 162.2 161 54.7
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 4.7e-38 161.8 161 54.7
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 1.4e-37 160.2 161 54.0
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 1.8e-37 159.8 161 52.8
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 5.2e-37 158.3 155 54.2
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 5.2e-37 158.3 161 51.6
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 5.2e-37 158.3 161 54.0
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 1.2e-36 157.1 161 51.6
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.2e-36 157.1 161 50.9
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 1.2e-36 157.1 161 49.7
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 1.2e-36 157.1 161 49.7
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 2.6e-36 156.0 161 52.2
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 4.4e-36 155.2 161 52.2
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 4.4e-36 155.2 157 50.3
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 4.4e-36 155.2 161 50.3
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 5.7e-36 154.8 161 50.9
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 9.8e-36 154.1 161 50.9
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 2.2e-35 152.9 161 49.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 2.2e-35 152.9 161 49.7
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 3.7e-35 152.1 161 50.3
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 3.7e-35 152.1 162 51.9
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 8.3e-35 151.0 161 50.9
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 8.3e-35 151.0 161 52.2
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.1e-34 150.6 161 52.2
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 1.1e-34 150.6 161 49.1
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.4e-34 150.2 161 50.9
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 2.4e-34 149.4 161 49.1
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 2.4e-34 149.4 161 51.6
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 2.4e-34 149.4 161 50.3
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 4.1e-34 148.7 161 49.1
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 4.1e-34 148.7 161 47.8
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 9.2e-34 147.5 161 51.6
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 9.2e-34 147.5 194 42.8
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 9.2e-34 147.5 161 49.1
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 2.7e-33 146.0 161 48.4
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 2.7e-33 146.0 161 48.4
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 2.7e-33 146.0 161 49.1
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 3.5e-33 145.6 161 48.4
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 4.5e-33 145.2 157 49.0
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 7.8e-33 144.4 161 49.1
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 1.0e-32 144.1 161 48.4
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 1.0e-32 144.1 161 48.4
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 1.3e-32 143.7 161 49.1
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.3e-32 143.7 161 47.8
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 1.7e-32 143.3 161 49.1
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-32 143.3 161 49.1
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-32 143.3 161 49.1
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 1.7e-32 143.3 161 49.1
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 1.7e-32 143.3 161 49.1
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 2.3e-32 142.9 161 49.1
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 6.6e-32 141.4 161 47.8
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 8.6e-32 141.0 159 48.4
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 1.1e-31 140.6 161 49.7
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 1.5e-31 140.2 155 49.0
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 5.6e-31 138.3 161 47.2
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.2e-30 137.1 161 45.3
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 1.6e-30 136.7 161 46.0
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 1.6e-30 136.7 161 46.6
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.1e-30 136.3 161 46.0
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 3.6e-30 135.6 161 45.3
Cpa.g.c41347 Carica papaya HOM05D003502 ORTHO05D004250 1.2e-28 130.6 66 100.0
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 5.8e-28 128.3 161 44.7
Actinidia21650 Actinidia chinensis HOM05D003502 ORTHO05D004250 1.3e-27 127.1 96 65.6
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 1.7e-27 126.7 75 77.3
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 2.2e-27 126.3 161 42.9
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 4.9e-27 125.2 161 44.1
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 8.3e-27 124.4 168 41.1
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 1.1e-26 124.0 161 45.3
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 1.1e-26 124.0 157 45.2
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 1.4e-26 123.6 157 42.7
CDE06G2703 Ceratophyllum demersum HOM05D003502 ORTHO05D004250 5.4e-26 121.7 72 75.0
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 7.0e-26 121.3 157 44.6
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 1.2e-25 120.6 79 74.7
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 5.0e-24 115.2 113 53.1
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 5.0e-24 115.2 160 42.5
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 5.6e-23 111.7 160 41.9
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 1.2e-22 110.5 160 41.9
EL10Ac7g17066 Beta vulgaris HOM05D003502 ORTHO05D004250 1.6e-22 110.2 91 57.1
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.6e-22 110.2 160 39.4
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 1.6e-22 110.2 68 75.0
ECA247G1432 Erigeron canadensis HOM05D003502 ORTHO05D004250 5.2e-21 105.1 157 40.8
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 4.4e-20 102.1 159 36.5
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 4.1e-18 95.5 148 38.5
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 3.9e-16 89.0 158 36.1
AUR62008741 Chenopodium quinoa HOM05D003502 ORTHO05D004250 8.6e-16 87.8 106 45.3
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 8.6e-16 87.8 58 69.0
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 3.1e-13 79.3 50 76.0
ATR1127G072 Amborella trichopoda HOM05D003502 ORTHO05D004250 4.0e-13 79.0 53 64.2
CBR_g46859 Chara braunii HOM05D003502 ORTHO05D004250 8.9e-13 77.8 85 43.5
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 1.5e-12 77.0 157 32.5
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 3.4e-12 75.9 50 74.0
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 9.9e-12 74.3 50 70.0
Cre09.g412750 Chlamydomonas reinhardtii HOM05D003502 ORTHO05D004250 1.9e-10 70.1 106 34.9
Lj3A923T57 Lonicera japonica HOM05D003502 ORTHO05D004250 1.7e-08 63.5 36 80.6
MBI19_g33447_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 1.2e-06 57.4 36 69.4
PRCOL_00004072 Prasinoderma coloniale HOM05D003502 ORTHO05D004250 2.8e-06 56.2 83 33.7


User provided reference genes

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