Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c43245 Carica papaya HOM05D002129 ORTHO05D002188 9.2e-204 713.8 487 100.0
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 2.1e-67 260.8 445 51.5
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 1.1e-66 258.5 359 53.2
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 4.9e-64 249.6 386 48.4
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 3.7e-59 233.4 403 52.6
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 3.4e-57 226.9 331 52.0
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 4.3e-52 209.9 355 42.0
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.2e-51 207.6 342 45.0
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 3.8e-48 196.8 348 37.1
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 2.5e-47 194.1 331 48.9
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 3.3e-44 183.7 324 50.6
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 3.7e-43 180.3 346 48.8
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 5.3e-42 176.4 334 47.6
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 4.5e-41 173.3 457 43.5
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.5e-40 169.5 358 34.9
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.9e-39 167.9 400 35.2
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 2.5e-39 167.5 358 34.6
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.2e-39 167.2 358 34.9
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 5.1e-37 159.8 340 33.2
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 5.1e-37 159.8 265 46.4
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.1e-36 158.7 231 41.6
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 3.3e-36 157.1 377 40.1
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 4.4e-36 156.8 401 33.7
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.2e-35 154.5 231 41.1
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.4e-34 151.8 442 38.9
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.8e-34 151.4 442 38.5
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.4e-34 151.0 231 40.3
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.4e-34 151.0 231 40.3
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 3.1e-34 150.6 304 48.0
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 1.5e-33 148.3 317 34.1
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 1.4e-31 141.7 213 54.0
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.5e-31 141.0 438 43.8
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.5e-31 141.0 438 43.8
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.6e-30 138.3 365 36.2
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 1.6e-30 138.3 353 39.7
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.7e-30 137.5 417 45.6
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 3.6e-30 137.1 220 38.2
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 6.1e-30 136.3 359 29.8
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.4e-29 135.2 365 35.6
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 1.1e-28 132.1 348 32.2
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 5.7e-28 129.8 230 54.3
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 2.8e-27 127.5 354 27.4
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 8.2e-27 125.9 340 31.2
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.1e-26 125.6 355 37.5
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.4e-26 125.2 325 31.7
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 2.4e-26 124.4 330 42.7
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 4.1e-26 123.6 460 25.4
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 5.3e-26 123.2 352 40.1
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 9.1e-26 122.5 345 33.6
FAN08G2732 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.2e-25 122.1 361 30.2
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 2.6e-25 120.9 359 28.1
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 3.5e-25 120.6 203 38.4
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 1.0e-24 119.0 239 50.2
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 2.2e-24 117.9 221 36.2
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 5.0e-24 116.7 348 36.5
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.5e-23 115.2 268 43.7
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 1.2e-22 112.1 503 30.6
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.1e-22 109.8 399 38.3
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 6.1e-22 109.8 356 38.2
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 8.0e-22 109.4 219 32.9
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.0e-21 109.0 474 24.1
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 1.8e-21 108.2 168 37.5
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 2.3e-21 107.8 386 37.6
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.2e-20 105.5 305 30.2
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 2.0e-20 104.8 354 26.3
Medtr8g099290 Medicago truncatula HOM05D002129 ORTHO05D002188 2.0e-20 104.8 482 28.0
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 4.4e-20 103.6 298 38.3
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 7.5e-20 102.8 377 34.0
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 1.3e-19 102.1 345 28.1
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.3e-19 102.1 359 27.0
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 3.7e-19 100.5 500 29.4
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 6.3e-19 99.8 347 39.5
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.4e-18 98.6 463 26.6
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 1.4e-18 98.6 324 37.7
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 1.8e-18 98.2 377 34.5
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 7.0e-18 96.3 214 32.7
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 9.1e-18 95.9 361 38.2
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.2e-17 95.5 264 47.0
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 2.0e-17 94.7 156 39.1
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.5e-17 94.0 285 28.4
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 7.7e-17 92.8 143 51.7
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.0e-16 92.4 310 27.1
TAR374G0015 Trochodendron aralioides HOM05D002129 ORTHO05D002188 1.7e-16 91.7 208 51.4
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 2.2e-16 91.3 346 34.7
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 5.0e-16 90.1 224 32.6
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.5e-15 88.6 330 27.9
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 1.5e-15 88.6 321 35.5
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 2.7e-14 84.3 227 28.2
Glyma.05G215000 Glycine max HOM05D002129 ORTHO05D002188 2.7e-14 84.3 339 32.4
TPR.G3416 Trifolium pratense HOM05D002129 ORTHO05D002188 4.7e-14 83.6 193 35.2
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 6.1e-14 83.2 291 35.4
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 1.0e-13 82.4 333 33.0
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 1.8e-13 81.6 351 25.6
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 2.3e-13 81.3 227 27.8
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 1.5e-12 78.6 227 30.4
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 2.0e-12 78.2 167 54.5
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 3.4e-12 77.4 372 28.2
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 4.4e-12 77.0 225 27.1
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 9.8e-12 75.9 288 30.2
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.3e-11 75.5 497 23.3
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.7e-11 75.1 135 37.8
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 2.8e-11 74.3 384 33.9
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.8e-11 73.6 135 37.0
TPR.G3450 Trifolium pratense HOM05D002129 ORTHO05D002188 4.8e-11 73.6 372 24.7
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 6.3e-11 73.2 161 55.3
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 8.3e-11 72.8 220 28.2
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 1.1e-10 72.4 203 26.6
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.1e-10 72.4 218 28.9
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 2.4e-10 71.2 351 21.7
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.1e-10 70.9 314 25.8
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 4.1e-10 70.5 311 34.4
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 4.1e-10 70.5 343 25.9
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 1.2e-09 68.9 86 43.0
Sabra01G0070200 Salix brachista HOM05D002129 ORTHO05D002188 1.2e-09 68.9 279 31.9
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 2.7e-09 67.8 205 31.7
Gohir.A08G099826 Gossypium hirsutum HOM05D002129 ORTHO05D002188 7.7e-09 66.2 91 47.3
Gorai.004G135300 Gossypium raimondii HOM05D002129 ORTHO05D002188 7.7e-09 66.2 91 47.3
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.0e-08 65.9 114 37.7
TPR.G24623 Trifolium pratense HOM05D002129 ORTHO05D002188 1.3e-08 65.5 87 43.7
TPR.G3374 Trifolium pratense HOM05D002129 ORTHO05D002188 1.3e-08 65.5 358 24.9
CAN.G825.40 Capsicum annuum HOM05D002129 ORTHO05D002188 2.3e-08 64.7 166 33.1
Medtr8g099280 Medicago truncatula HOM05D002129 ORTHO05D002188 2.3e-08 64.7 202 28.7
Actinidia27334 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.9e-08 64.3 145 51.7
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 2.9e-08 64.3 365 28.8
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 5.0e-08 63.5 389 25.2
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 6.5e-08 63.2 173 31.8
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.1e-07 62.4 145 36.6
Potri.001G094332 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.5e-07 62.0 83 42.2
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.5e-07 62.0 84 41.7
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.9e-07 61.6 56 60.7
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.9e-07 61.6 56 60.7
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 1.9e-07 61.6 360 33.6
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 1.9e-07 61.6 315 21.9
Actinidia22719 Actinidia chinensis HOM05D002129 ORTHO05D002188 4.2e-07 60.5 91 38.5
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 4.2e-07 60.5 158 36.7
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.2e-07 60.5 349 24.9
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 7.2e-07 59.7 73 49.3
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 9.5e-07 59.3 130 60.0
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 9.5e-07 59.3 353 30.9
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 9.5e-07 59.3 212 25.0
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 1.2e-06 58.9 312 23.7
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.6e-06 58.5 134 32.1
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.6e-06 58.5 246 26.0
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.1e-06 58.2 326 26.1
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 2.1e-06 58.2 259 27.4
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 2.1e-06 58.2 259 27.4
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 4.7e-06 57.0 205 25.9
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 8.0e-06 56.2 434 30.2


User provided reference genes

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