Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c41347 Carica papaya HOM05D003502 ORTHO05D004250 4.0e-190 667.9 336 100.0
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 5.3e-142 508.1 344 74.7
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 6.7e-137 491.1 344 73.0
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 2.6e-136 489.2 345 70.7
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 7.4e-136 487.6 338 73.4
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 7.4e-136 487.6 344 72.4
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 6.3e-135 484.6 345 72.2
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 8.2e-135 484.2 344 71.5
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 1.1e-134 483.8 342 72.5
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 3.1e-134 482.3 345 72.5
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 7.0e-134 481.1 345 69.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 7.0e-134 481.1 345 72.5
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 2.6e-133 479.2 344 70.3
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 1.0e-132 477.2 345 71.3
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 1.0e-132 477.2 343 71.1
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 1.7e-132 476.5 333 72.4
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 2.2e-132 476.1 345 69.9
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 5.0e-132 474.9 337 71.2
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 6.5e-132 474.6 344 70.1
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 1.1e-131 473.8 344 70.1
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 1.4e-131 473.4 345 71.3
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 3.2e-131 472.2 337 69.4
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.2e-130 470.3 344 69.8
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 2.7e-130 469.2 344 69.2
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 3.6e-130 468.8 342 70.5
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 3.0e-129 465.7 345 70.4
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 6.7e-129 464.5 344 68.6
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 2.0e-128 463.0 344 68.9
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 3.3e-128 462.2 344 68.3
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 5.7e-128 461.5 345 69.6
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 1.3e-127 460.3 344 67.7
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 1.7e-127 459.9 345 68.7
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 2.2e-127 459.5 345 68.4
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 2.2e-127 459.5 344 69.2
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 4.8e-127 458.4 344 68.0
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 4.8e-127 458.4 342 69.9
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 4.8e-127 458.4 342 68.7
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 4.8e-127 458.4 342 68.7
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 6.3e-127 458.0 344 67.2
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 8.2e-127 457.6 345 69.6
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 1.8e-126 456.4 342 68.7
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.8e-126 456.4 342 68.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 7.7e-125 451.1 345 66.4
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.3e-124 450.3 345 66.1
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 1.7e-124 449.9 328 71.0
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 3.8e-124 448.7 343 67.3
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 6.5e-124 448.0 342 67.3
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 6.5e-124 448.0 343 68.5
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.1e-123 447.2 342 67.5
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.9e-123 446.4 344 67.4
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 3.2e-123 445.7 337 68.2
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 4.2e-123 445.3 346 67.9
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 9.4e-123 444.1 324 70.1
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 3.6e-122 442.2 345 65.8
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 1.0e-121 440.7 364 62.9
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 1.0e-121 440.7 345 64.6
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 1.2e-120 437.2 365 63.3
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 1.7e-119 433.3 345 64.6
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 1.8e-118 429.9 345 63.5
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 2.4e-118 429.5 345 63.5
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 4.5e-117 425.2 345 62.0
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 1.0e-116 424.1 345 62.0
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 1.0e-116 424.1 345 62.0
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 1.0e-116 424.1 345 62.0
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 1.0e-116 424.1 345 62.0
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 1.0e-116 424.1 345 62.0
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 2.2e-116 422.9 337 62.6
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 8.5e-116 421.0 345 63.2
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 1.1e-115 420.6 345 62.9
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 2.5e-115 419.5 345 61.7
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 1.2e-114 417.2 345 62.0
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 4.7e-114 415.2 345 62.9
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 4.7e-114 415.2 341 61.9
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 6.1e-114 414.8 345 61.2
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 8.0e-114 414.5 346 62.4
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 1.8e-113 413.3 345 61.7
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 5.2e-113 411.8 339 60.8
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 6.8e-113 411.4 346 61.6
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 8.8e-113 411.0 346 62.1
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 2.0e-112 409.8 345 61.2
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 3.4e-112 409.1 341 61.9
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 5.7e-112 408.3 344 61.9
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 2.2e-111 406.4 337 61.7
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 6.3e-111 404.8 345 60.0
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 8.3e-111 404.4 344 60.2
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 7.0e-110 401.4 330 63.9
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 9.1e-110 401.0 329 61.4
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 2.3e-108 396.4 343 59.8
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 2.9e-108 396.0 338 60.1
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 1.1e-107 394.0 328 59.1
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 2.5e-107 392.9 335 60.9
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 3.3e-107 392.5 343 60.3
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 1.6e-106 390.2 343 60.3
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 2.8e-106 389.4 345 58.3
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.4e-105 387.1 330 60.0
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 1.2e-104 384.0 330 60.0
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 3.4e-104 382.5 345 58.8
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 4.4e-104 382.1 350 58.0
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 2.2e-103 379.8 344 57.3
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 5.4e-102 375.2 371 54.7
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.2e-101 374.0 330 58.8
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 3.3e-99 365.9 336 58.9
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 1.2e-93 347.4 321 60.1
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 6.8e-89 331.6 347 52.4
TAR624G0570 Trochodendron aralioides HOM05D003502 ORTHO05D004250 2.9e-87 326.2 252 65.9
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 6.4e-87 325.1 347 51.3
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 1.6e-82 310.5 324 49.7
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 2.8e-82 309.7 325 51.7
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 6.4e-79 298.5 339 48.1
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 3.5e-77 292.7 356 46.1
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 3.5e-77 292.7 356 46.1
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 7.1e-70 268.5 310 47.1
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 2.6e-64 250.0 337 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 6.9e-57 225.3 333 37.8
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 2.2e-55 220.3 334 40.1
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 3.9e-52 209.5 341 36.4
Duzib106G1276 Durio zibethinus HOM05D003502 ORTHO05D004250 5.3e-49 199.1 205 55.6
ECA248G0871 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.3e-44 184.5 285 37.5
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 2.1e-42 177.2 337 36.2
AUR62006364 Chenopodium quinoa HOM05D003502 ORTHO05D004250 5.7e-35 152.5 219 41.1
Lj3C923G18 Lonicera japonica HOM05D003502 ORTHO05D004250 2.8e-34 150.2 103 70.9
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 1.5e-32 144.4 131 58.0
CDE06G0571 Ceratophyllum demersum HOM05D003502 ORTHO05D004250 1.1e-30 138.3 176 46.6
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 3.2e-30 136.7 104 64.4
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 7.2e-30 135.6 95 74.7
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 6.1e-29 132.5 230 34.8
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 1.4e-28 131.3 93 68.8
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 2.3e-28 130.6 66 100.0
ECA247G1432 Erigeron canadensis HOM05D003502 ORTHO05D004250 2.0e-27 127.5 327 33.0
Gorai.012G007600 Gossypium raimondii HOM05D003502 ORTHO05D004250 5.7e-27 125.9 96 64.6
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 6.3e-26 122.5 103 64.1
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 1.0e-23 115.2 81 67.9
EL10Ac7g17066 Beta vulgaris HOM05D003502 ORTHO05D004250 2.8e-18 97.1 92 50.0
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 3.9e-12 76.6 68 50.0
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 3.9e-12 76.6 65 63.1
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 3.8e-07 60.1 53 58.5


User provided reference genes

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