Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c41200 Carica papaya HOM05D003128 ORTHO05D004333 5.9e-53 210.7 114 100.0
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 2.6e-32 142.1 112 68.8
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 2.4e-30 135.6 112 67.0
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 1.0e-28 130.2 114 64.9
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 1.3e-28 129.8 113 66.4
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 3.9e-28 128.3 112 66.1
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 3.9e-28 128.3 112 66.1
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 3.9e-28 128.3 112 63.4
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 8.6e-28 127.1 84 75.0
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.1e-27 126.7 115 63.5
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 1.5e-27 126.3 115 63.5
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 2.5e-27 125.6 113 61.9
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 3.3e-27 125.2 113 61.9
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 7.3e-27 124.0 112 65.2
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.2e-26 123.2 111 64.0
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 1.6e-26 122.9 111 63.1
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 2.8e-26 122.1 112 60.7
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 1.1e-25 120.2 112 61.6
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 1.8e-25 119.4 97 69.1
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 5.2e-25 117.9 96 69.8
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 6.9e-25 117.5 113 62.8
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 6.9e-25 117.5 113 61.9
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 6.9e-25 117.5 117 58.1
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 8.9e-25 117.1 114 65.8
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.2e-24 116.7 113 59.3
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.2e-24 116.7 113 59.3
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 7.6e-24 114.0 113 61.9
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 9.9e-24 113.6 112 60.7
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 9.9e-24 113.6 76 76.3
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.3e-23 113.2 111 57.7
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 1.7e-23 112.8 112 58.0
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 2.2e-23 112.5 111 52.3
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 2.2e-23 112.5 111 60.4
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 2.9e-23 112.1 113 61.1
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 4.9e-23 111.3 113 57.5
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 4.9e-23 111.3 117 54.7
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 6.4e-23 110.9 111 59.5
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 8.4e-23 110.5 113 55.8
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.4e-22 109.8 117 59.8
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 2.4e-22 109.0 95 65.3
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 2.4e-22 109.0 113 59.3
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.2e-22 108.6 111 57.7
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 4.2e-22 108.2 87 67.8
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 4.2e-22 108.2 87 67.8
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 5.4e-22 107.8 98 60.2
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 9.3e-22 107.1 112 57.1
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 1.2e-21 106.7 87 64.4
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.2e-21 106.7 112 60.7
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.2e-21 106.7 90 62.2
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 3.5e-21 105.1 88 64.8
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 7.8e-21 104.0 112 55.4
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 7.8e-21 104.0 106 56.6
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.7e-20 102.8 113 57.5
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 2.3e-20 102.4 99 57.6
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 2.3e-20 102.4 115 57.4
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 3.0e-20 102.1 112 55.4
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 3.9e-20 101.7 111 55.0
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 6.6e-20 100.9 112 55.4
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 6.6e-20 100.9 116 55.2
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 6.6e-20 100.9 114 55.3
AUR62003293 Chenopodium quinoa HOM05D003128 ORTHO05D004333 1.1e-19 100.1 83 65.1
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 1.1e-19 100.1 119 52.9
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.5e-19 99.8 111 59.5
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 3.3e-19 98.6 115 53.0
arahy.Tifrunner.gnm1.ann1.31C5CF Arachis hypogaea HOM05D003128 ORTHO05D004333 7.3e-19 97.4 80 61.2
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 7.3e-19 97.4 112 50.0
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 9.6e-19 97.1 123 48.0
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.3e-18 96.7 111 55.9
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 2.8e-18 95.5 99 54.5
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 3.6e-18 95.1 114 51.8
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 3.6e-18 95.1 113 54.9
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 4.8e-18 94.7 79 63.3
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 4.8e-18 94.7 116 50.9
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 4.8e-18 94.7 111 56.8
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 6.2e-18 94.4 120 49.2
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 8.1e-18 94.0 93 60.2
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 8.1e-18 94.0 114 50.0
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 1.1e-17 93.6 84 60.7
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 1.8e-17 92.8 111 54.1
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 1.8e-17 92.8 111 54.1
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.0e-17 91.7 118 47.5
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 5.3e-17 91.3 111 53.2
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 5.3e-17 91.3 118 46.6
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.3e-17 91.3 118 46.6
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 5.3e-17 91.3 114 50.0
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 5.3e-17 91.3 111 49.5
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 6.9e-17 90.9 117 51.3
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 9.0e-17 90.5 111 52.3
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.5e-16 89.7 118 45.8
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 1.5e-16 89.7 78 61.5
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 2.6e-16 89.0 114 48.2
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 3.4e-16 88.6 115 57.4
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.7e-15 86.3 112 51.8
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 1.7e-15 86.3 115 53.0
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 1.7e-15 86.3 115 53.0
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.7e-15 86.3 112 51.8
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.9e-15 85.5 97 51.5
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 3.8e-15 85.1 117 46.2
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.9e-15 84.7 110 50.9
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.9e-15 84.7 110 50.9
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 8.4e-15 84.0 115 51.3
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 8.4e-15 84.0 112 43.8
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.1e-14 83.6 111 54.1
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.9e-14 82.8 100 57.0
Glyma.14G080000 Glycine max HOM05D003128 ORTHO05D004333 1.9e-14 82.8 104 51.9
SEGI_30432 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 1.9e-14 82.8 112 45.5
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 2.4e-14 82.4 100 56.0
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.4e-14 82.4 98 57.1
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 3.2e-14 82.0 76 55.3
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 4.2e-14 81.6 116 55.2
BolC8t50947H Brassica oleracea HOM05D003128 ORTHO05D004333 7.1e-14 80.9 111 52.3
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 7.1e-14 80.9 99 49.5
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 1.2e-13 80.1 106 50.9
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 1.3e-12 76.6 112 46.4
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.8e-12 76.3 69 68.1
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 2.3e-12 75.9 101 51.5
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.0e-12 75.5 110 45.5
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.0e-12 75.5 110 45.5
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 5.1e-12 74.7 81 48.1
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 5.1e-12 74.7 110 48.2
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 1.5e-11 73.2 96 44.8
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.3e-11 72.0 93 46.2
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 3.3e-11 72.0 103 41.7
CDE08G1262 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 7.4e-11 70.9 57 56.1
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 7.4e-11 70.9 81 45.7
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 1.3e-10 70.1 116 47.4
CAN.G710.4 Capsicum annuum HOM05D003128 ORTHO05D004333 2.8e-10 68.9 49 65.3
ECA238G4552 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-10 68.6 76 47.4
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 6.2e-10 67.8 82 50.0
C08p48830 Brassica napus HOM05D003128 ORTHO05D024111 3.1e-09 65.5 77 54.5
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 4.0e-09 65.1 101 47.5
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 5.3e-09 64.7 102 40.2
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 9.0e-09 63.9 115 40.0
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 9.0e-09 63.9 130 37.7
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 2.0e-08 62.8 112 41.1
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 2.0e-08 62.8 96 43.8
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 5.8e-08 61.2 82 43.9
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.7e-07 59.7 99 42.4
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.8e-07 58.5 108 41.7
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.4e-07 57.4 99 41.4


User provided reference genes

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