Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c40106 Carica papaya HOM05D002396 ORTHO05D022224 8.3e-11 68.9 34 100.0
Manes.09G108700 Manihot esculenta HOM05D002396 ORTHO05D002779 7.1e-10 65.9 34 94.1
Cpa.g.sc54.54 Carica papaya HOM05D002396 ORTHO05D002779 9.2e-10 65.5 34 91.2
Manes.08G094900 Manihot esculenta HOM05D002396 ORTHO05D002779 1.6e-09 64.7 34 91.2
Eucgr.J00793 Eucalyptus grandis HOM05D002396 ORTHO05D002779 3.5e-09 63.5 34 88.2
MELO3C014611.2 Cucumis melo HOM05D002396 ORTHO05D002779 4.6e-09 63.2 34 88.2
CsaV3_4G024100 Cucumis sativus L. HOM05D002396 ORTHO05D002779 4.6e-09 63.2 34 88.2
Sed0019733 Sechium edule HOM05D002396 ORTHO05D002779 6.0e-09 62.8 34 85.3
Ciclev10027820m.g Citrus clementina HOM05D002396 ORTHO05D002779 7.8e-09 62.4 34 82.4
COL.COLO4_31193 Corchorus olitorius HOM05D002396 ORTHO05D002779 1.0e-08 62.0 34 85.3
Duzib187G0047 Durio zibethinus HOM05D002396 ORTHO05D002779 1.0e-08 62.0 34 85.3
Duzib212G0403 Durio zibethinus HOM05D002396 ORTHO05D002779 1.0e-08 62.0 34 85.3
Gohir.A03G088400 Gossypium hirsutum HOM05D002396 ORTHO05D002779 1.0e-08 62.0 34 85.3
Gohir.D02G110100 Gossypium hirsutum HOM05D002396 ORTHO05D002779 1.0e-08 62.0 34 85.3
Gorai.005G123200 Gossypium raimondii HOM05D002396 ORTHO05D002779 1.0e-08 62.0 34 85.3
Cfa009729 Carpinus fangiana HOM05D002396 ORTHO05D002779 1.3e-08 61.6 34 85.3
ClCG02G023410 Citrullus lanatus HOM05D002396 ORTHO05D002779 1.7e-08 61.2 34 85.3
Dinv36287 Davidia involucrata HOM05D002396 ORTHO05D002779 1.7e-08 61.2 34 85.3
QL01p005537 Quercus lobata HOM05D002396 ORTHO05D002779 1.7e-08 61.2 34 82.4
TAR636G2523 Trochodendron aralioides HOM05D002396 ORTHO05D002779 1.7e-08 61.2 34 82.4
CiPaw.14G121200 Carya illinoinensis HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 79.4
FvH4_3g43240 Fragaria vesca HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 85.3
FAN11G2216 Fragaria x ananassa HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 85.3
FAN16G2660 Fragaria x ananassa HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 85.3
FAN21G1898 Fragaria x ananassa HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 85.3
FAN25G3119 Fragaria x ananassa HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 85.3
Lj2A647T22 Lonicera japonica HOM05D002396 ORTHO05D022224 3.0e-08 60.5 34 82.4
Lj2A648T13 Lonicera japonica HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 82.4
RcHm_v2.0_Chr5g0077291 Rosa chinensis HOM05D002396 ORTHO05D002779 3.0e-08 60.5 34 85.3
CiPaw.13G163900 Carya illinoinensis HOM05D002396 ORTHO05D002779 3.9e-08 60.1 34 82.4
Manes.05G146001 Manihot esculenta HOM05D002396 ORTHO05D022224 3.9e-08 60.1 34 85.3
Manes.07G069233 Manihot esculenta HOM05D002396 ORTHO05D022224 3.9e-08 60.1 34 85.3
CANSAT64G2151 Cannabis sativa HOM05D002396 ORTHO05D002779 5.1e-08 59.7 34 82.4
Cc01_g04700 Coffea canephora HOM05D002396 ORTHO05D002779 5.1e-08 59.7 34 79.4
QL01p005503 Quercus lobata HOM05D002396 ORTHO05D002779 5.1e-08 59.7 34 82.4
arahy.Tifrunner.gnm1.ann1.6Y08YU Arachis hypogaea HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
arahy.Tifrunner.gnm1.ann1.7S1CUY Arachis hypogaea HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
Lalb_Chr18g0061001 Lupinus albus HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
Lalb_Chr20g0123641 Lupinus albus HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
Phvul.006G029300 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
Prupe.6G022700 Prunus persica HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
VMungo0540G0651 Vigna mungo HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
VMungo0540G1985 Vigna mungo HOM05D002396 ORTHO05D002779 6.6e-08 59.3 34 79.4
Lj9A644G46 Lonicera japonica HOM05D002396 ORTHO05D002779 8.6e-08 58.9 34 79.4
Atru.chr5.3018 Acer truncatum HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 76.5
COL.COLO4_22130 Corchorus olitorius HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 79.4
Glyma.08G302400 Glycine max HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 76.5
Glyma.13G178100 Glycine max HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 76.5
Glyma.18G117500 Glycine max HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 76.5
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 79.4
Nitab4.5_0002778g0020 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 79.4
Sed0022440 Sechium edule HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 82.4
Thecc.01G386000 Theobroma cacao HOM05D002396 ORTHO05D002779 1.1e-07 58.5 34 82.4
Nn2g12157 Nelumbo nucifera HOM05D002396 ORTHO05D002779 1.5e-07 58.2 34 76.5
Peaxi162Scf00045g00141 Petunia axillaris HOM05D002396 ORTHO05D002779 1.5e-07 58.2 34 79.4
TPR.G8496 Trifolium pratense HOM05D002396 ORTHO05D002779 1.9e-07 57.8 34 79.4
MSTRG.17579 Avicennia marina HOM05D002396 ORTHO05D002779 2.5e-07 57.4 34 79.4
Medtr3g434840 Medicago truncatula HOM05D002396 ORTHO05D002779 2.5e-07 57.4 34 76.5
Hund22070 Selenicereus undatus HOM05D002396 ORTHO05D002779 2.5e-07 57.4 34 76.5
TPR.G18230 Trifolium pratense HOM05D002396 ORTHO05D002779 2.5e-07 57.4 34 76.5
Lj6g0001394 Lotus japonicus HOM05D002396 ORTHO05D002779 3.3e-07 57.0 34 76.5
Oeu035712.1 Olea europaea HOM05D002396 ORTHO05D002779 3.3e-07 57.0 34 76.5
Psat0s3534g0040 Pisum sativum HOM05D002396 ORTHO05D002779 3.3e-07 57.0 34 76.5
Potri.016G121100 Populus trichocarpa HOM05D002396 ORTHO05D002779 3.3e-07 57.0 34 82.4
Sabra16G0117000 Salix brachista HOM05D002396 ORTHO05D002779 3.3e-07 57.0 34 82.4
THA.LOC104813591 Tarenaya hassleriana HOM05D002396 ORTHO05D002779 3.3e-07 57.0 34 79.4
Hma1.2p1_0728F.1_g209280 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 4.3e-07 56.6 35 82.9
MD11G1028600 Malus domestica HOM05D002396 ORTHO05D002779 4.3e-07 56.6 34 76.5
TWI53G1590 Tripterygium wilfordii HOM05D002396 ORTHO05D002779 4.3e-07 56.6 34 76.5
DCAR_011585 Daucus carota HOM05D002396 ORTHO05D002779 5.6e-07 56.2 34 76.5
Lsat_1_v5_gn_8_21361 Lactuca sativa HOM05D002396 ORTHO05D002779 5.6e-07 56.2 34 76.5
TAR633G0443 Trochodendron aralioides HOM05D002396 ORTHO05D002779 5.6e-07 56.2 34 76.5
Ca_26289_v3 Cicer arietinum L. HOM05D002396 ORTHO05D002779 7.3e-07 55.8 34 76.5
RcHm_v2.0_Chr5g0002291 Rosa chinensis HOM05D002396 ORTHO05D002779 7.3e-07 55.8 34 73.5
TPR.G35307 Trifolium pratense HOM05D002396 ORTHO05D002779 7.3e-07 55.8 34 76.5
Actinidia01683 Actinidia chinensis HOM05D002396 ORTHO05D002779 9.5e-07 55.5 35 82.9
Ah.15g096650 Amaranthus hybridus HOM05D002396 ORTHO05D002779 9.5e-07 55.5 34 73.5
MD03G1023500 Malus domestica HOM05D002396 ORTHO05D002779 9.5e-07 55.5 34 76.5
Solyc08g005190.4 Solanum lycopersicum HOM05D002396 ORTHO05D002779 9.5e-07 55.5 34 76.5
Sopen08g001210 Solanum pennellii HOM05D002396 ORTHO05D002779 9.5e-07 55.5 34 76.5
PGSC0003DMG400017844 Solanum tuberosum HOM05D002396 ORTHO05D002779 9.5e-07 55.5 34 76.5
Eucgr.J01046 Eucalyptus grandis HOM05D002396 ORTHO05D002779 1.2e-06 55.1 31 87.1
Nitab4.5_0001477g0090 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.6e-06 54.7 34 73.5
Phvul.006G191000 Phaseolus vulgaris HOM05D002396 ORTHO05D002779 1.6e-06 54.7 34 73.5
PGR119G1899 Punica granatum HOM05D002396 ORTHO05D002779 1.6e-06 54.7 34 73.5
Sc09g0000540 Simmondsia chinensis HOM05D002396 ORTHO05D002779 1.6e-06 54.7 34 73.5
vmacro09706 Vaccinium macrocarpon HOM05D002396 ORTHO05D002779 1.6e-06 54.7 35 80.0
Aqoxy1G00299 Aquilegia oxysepala HOM05D002396 ORTHO05D002779 2.1e-06 54.3 34 70.6
TWI77G0175 Tripterygium wilfordii HOM05D002396 ORTHO05D002779 2.1e-06 54.3 34 73.5
EL10Ac7g15883 Beta vulgaris HOM05D002396 ORTHO05D002779 2.8e-06 53.9 34 73.5
Lj6g0014469 Lotus japonicus HOM05D002396 ORTHO05D002779 2.8e-06 53.9 34 76.5
CSS0012777 Camellia sinensis var. sinensis HOM05D002396 ORTHO05D002779 3.6e-06 53.5 35 80.0
CSS0015073 Camellia sinensis var. sinensis HOM05D002396 ORTHO05D002779 3.6e-06 53.5 35 80.0
CAN.G1126.12 Capsicum annuum HOM05D002396 ORTHO05D002779 3.6e-06 53.5 34 73.5
CAN.G137.2 Capsicum annuum HOM05D002396 ORTHO05D002779 3.6e-06 53.5 34 73.5
HanXRQChr12g0370361 Helianthus annuus HOM05D002396 ORTHO05D002779 3.6e-06 53.5 34 73.5
Solyc04g079920.4 Solanum lycopersicum HOM05D002396 ORTHO05D002779 3.6e-06 53.5 34 73.5
Sopen04g033500 Solanum pennellii HOM05D002396 ORTHO05D002779 3.6e-06 53.5 34 73.5
PGSC0003DMG400027846 Solanum tuberosum HOM05D002396 ORTHO05D002779 3.6e-06 53.5 34 73.5
CDE07G0369 Ceratophyllum demersum HOM05D002396 ORTHO05D002779 4.7e-06 53.1 34 70.6
Hma1.2p1_0045F.1_g026480 Hydrangea macrophylla HOM05D002396 ORTHO05D002779 4.7e-06 53.1 27 88.9
Nitab4.5_0005609g0030 Nicotiana tabacum HOM05D002396 ORTHO05D002779 4.7e-06 53.1 34 73.5
Rhsim01G0190300 Rhododendron simsii HOM05D002396 ORTHO05D002779 4.7e-06 53.1 40 70.0
SalBow3G0072 Salvia bowleyana HOM05D002396 ORTHO05D002779 4.7e-06 53.1 34 73.5
SHI32650 Sapria himalayana HOM05D002396 ORTHO05D002779 4.7e-06 53.1 34 76.5
Os12g0256300 Oryza sativa ssp. japonica HOM05D002396 ORTHO05D002779 6.2e-06 52.8 34 64.7
unitig_699.g19131 Utricularia gibba HOM05D002396 ORTHO05D002779 6.2e-06 52.8 33 72.7
PSO732G0266 Papaver somniferum HOM05D002396 ORTHO05D002779 8.1e-06 52.4 34 67.6
Sed0023269 Sechium edule HOM05D002396 ORTHO05D002779 8.1e-06 52.4 33 75.8
SGA_v2.0_scaffold3G01533 Striga asiatica HOM05D002396 ORTHO05D002779 8.1e-06 52.4 34 70.6
SGA_v2.0_scaffold3G01551 Striga asiatica HOM05D002396 ORTHO05D002779 8.1e-06 52.4 34 70.6


User provided reference genes

Program Settings