Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34134 Carica papaya HOM05D005083 ORTHO05D006310 1.1e-87 326.6 164 100.0
Atru.chr12.1671 Acer truncatum HOM05D005083 ORTHO05D006310 2.7e-54 215.7 157 72.6
TWI36G0321 Tripterygium wilfordii HOM05D005083 ORTHO05D006310 1.5e-52 209.9 151 69.5
Thecc.05G188600 Theobroma cacao HOM05D005083 ORTHO05D006310 1.9e-52 209.5 157 72.0
Cfa006235 Carpinus fangiana HOM05D005083 ORTHO05D006310 2.5e-52 209.1 153 70.6
Gohir.D01G094500 Gossypium hirsutum HOM05D005083 ORTHO05D006310 2.5e-52 209.1 154 71.4
Gorai.002G119900 Gossypium raimondii HOM05D005083 ORTHO05D006310 2.5e-52 209.1 154 71.4
Gohir.A01G108100 Gossypium hirsutum HOM05D005083 ORTHO05D006310 7.2e-52 207.6 154 70.8
arahy.Tifrunner.gnm1.ann1.1T2QZ7 Arachis hypogaea HOM05D005083 ORTHO05D006310 1.2e-51 206.8 163 63.8
Duzib128G0478 Durio zibethinus HOM05D005083 ORTHO05D006310 4.7e-51 204.9 157 68.8
arahy.Tifrunner.gnm1.ann1.PCAY5Y Arachis hypogaea HOM05D005083 ORTHO05D006310 6.1e-51 204.5 163 63.2
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 1.0e-50 203.8 151 72.2
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 1.4e-50 203.4 157 68.8
Lj1g0009175 Lotus japonicus HOM05D005083 ORTHO05D006310 1.4e-50 203.4 150 66.0
Ca_23185_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 2.3e-50 202.6 150 68.0
Ca_30805_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 2.3e-50 202.6 150 68.0
CiPaw.07G085600 Carya illinoinensis HOM05D005083 ORTHO05D006310 3.0e-50 202.2 151 68.9
Ciclev10004486m.g Citrus clementina HOM05D005083 ORTHO05D006310 4.0e-50 201.8 170 64.1
MELO3C014078.2 Cucumis melo HOM05D005083 ORTHO05D006310 4.0e-50 201.8 151 71.5
CsaV3_3G003930 Cucumis sativus L. HOM05D005083 ORTHO05D006310 8.9e-50 200.7 151 70.9
VMungo0331G1409 Vigna mungo HOM05D005083 ORTHO05D006310 1.2e-49 200.3 151 68.9
QL08p044788 Quercus lobata HOM05D005083 ORTHO05D006310 1.5e-49 199.9 150 69.3
Phvul.010G031700 Phaseolus vulgaris HOM05D005083 ORTHO05D006310 3.4e-49 198.7 152 67.1
Potri.010G180700 Populus trichocarpa HOM05D005083 ORTHO05D006310 3.4e-49 198.7 151 68.2
ClCG10G004080 Citrullus lanatus HOM05D005083 ORTHO05D006310 5.7e-49 198.0 146 70.5
COL.COLO4_36603 Corchorus olitorius HOM05D005083 ORTHO05D006310 5.7e-49 198.0 148 73.6
Glyma.16G082900 Glycine max HOM05D005083 ORTHO05D006310 7.5e-49 197.6 152 67.1
MBI18_g24480_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 9.8e-49 197.2 153 65.4
TAR375G0465 Trochodendron aralioides HOM05D005083 ORTHO05D006310 2.2e-48 196.1 156 66.0
GSVIVG01032444001 Vitis vinifera HOM05D005083 ORTHO05D006310 4.9e-48 194.9 157 68.2
CSS0048819 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 6.3e-48 194.5 154 64.9
Medtr8g011450 Medicago truncatula HOM05D005083 ORTHO05D006310 8.3e-48 194.1 149 64.4
CSS0033222 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 2.4e-47 192.6 153 64.1
Glyma.03G090100 Glycine max HOM05D005083 ORTHO05D006310 2.4e-47 192.6 150 66.7
Glyma.20G051200 Glycine max HOM05D005083 ORTHO05D006310 3.1e-47 192.2 152 64.5
Lalb_Chr03g0041081 Lupinus albus HOM05D005083 ORTHO05D006310 3.1e-47 192.2 156 64.7
RcHm_v2.0_Chr3g0447481 Rosa chinensis HOM05D005083 ORTHO05D006310 4.1e-47 191.8 150 64.7
TPR.G28978 Trifolium pratense HOM05D005083 ORTHO05D006310 5.4e-47 191.4 150 63.3
Prupe.7G036600 Prunus persica HOM05D005083 ORTHO05D006310 9.2e-47 190.7 154 62.3
Rhsim05G0167600 Rhododendron simsii HOM05D005083 ORTHO05D006310 1.2e-46 190.3 157 63.1
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 2.0e-46 189.5 157 65.0
THA.LOC104820850 Tarenaya hassleriana HOM05D005083 ORTHO05D006310 4.5e-46 188.3 148 66.2
Nn1g09878 Nelumbo nucifera HOM05D005083 ORTHO05D006310 5.9e-46 188.0 158 63.9
Eucgr.B01438 Eucalyptus grandis HOM05D005083 ORTHO05D006310 1.3e-45 186.8 157 62.4
Actinidia06798 Actinidia chinensis HOM05D005083 ORTHO05D006310 1.7e-45 186.4 157 64.3
PSO210G3440 Papaver somniferum HOM05D005083 ORTHO05D006310 1.7e-45 186.4 155 62.6
PSO832G1645 Papaver somniferum HOM05D005083 ORTHO05D006310 1.7e-45 186.4 155 62.6
Aa31LG11G12310 Aethionema arabicum HOM05D005083 ORTHO05D006310 3.8e-45 185.3 148 62.8
Ah.06g195270 Amaranthus hybridus HOM05D005083 ORTHO05D006310 5.0e-45 184.9 151 61.6
CSS0010526 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 5.0e-45 184.9 151 64.2
Os04g0501700 Oryza sativa ssp. japonica HOM05D005083 ORTHO05D006310 6.6e-45 184.5 154 63.6
Psat4g206560 Pisum sativum HOM05D005083 ORTHO05D006310 6.6e-45 184.5 146 65.1
PGR119G1162 Punica granatum HOM05D005083 ORTHO05D006310 6.6e-45 184.5 153 64.1
AT5G17410 Arabidopsis thaliana HOM05D005083 ORTHO05D006310 8.6e-45 184.1 148 62.2
Thhalv10012868m.g Eutrema salsugineum HOM05D005083 ORTHO05D006310 1.1e-44 183.7 148 62.2
BcaB01g04935 Brassica carinata HOM05D005083 ORTHO05D006310 1.5e-44 183.3 148 61.5
CARHR195800 Cardamine hirsuta HOM05D005083 ORTHO05D006310 1.5e-44 183.3 148 61.5
Sp6g26810 Schrenkiella parvula HOM05D005083 ORTHO05D006310 1.5e-44 183.3 148 62.2
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 1.9e-44 183.0 148 61.5
A03p08290 Brassica napus HOM05D001138 ORTHO05D006310 2.5e-44 182.6 147 61.9
C03p09650 Brassica napus HOM05D001138 ORTHO05D006310 2.5e-44 182.6 147 61.9
BraA03t10156Z Brassica rapa HOM05D005083 ORTHO05D006310 2.5e-44 182.6 147 61.9
Carub.0006s1563 Capsella rubella HOM05D005083 ORTHO05D006310 2.5e-44 182.6 148 61.5
BcaB01g05202 Brassica carinata HOM05D005083 ORTHO05D006310 5.6e-44 181.4 148 60.8
BolC3t13463H Brassica oleracea HOM05D005083 ORTHO05D006310 9.5e-44 180.6 147 61.2
MD14G1089300 Malus domestica HOM05D005083 ORTHO05D006310 9.5e-44 180.6 157 61.8
Hund07372 Selenicereus undatus HOM05D005083 ORTHO05D006310 1.2e-43 180.3 151 61.6
AUR62000278 Chenopodium quinoa HOM05D005083 ORTHO05D006310 2.1e-43 179.5 148 63.5
AUR62006625 Chenopodium quinoa HOM05D005083 ORTHO05D006310 2.1e-43 179.5 149 64.4
Oeu062030.2 Olea europaea HOM05D005083 ORTHO05D006310 3.6e-43 178.7 164 56.7
Migut.F01835 Erythranthe guttata HOM05D005083 ORTHO05D006310 6.1e-43 177.9 150 61.3
SGA_v2.0_scaffold122G33218 Striga asiatica HOM05D005083 ORTHO05D006310 8.0e-43 177.6 151 60.9
SalBow6G5693 Salvia bowleyana HOM05D005083 ORTHO05D006310 1.0e-42 177.2 152 59.2
ATR1096G007 Amborella trichopoda HOM05D005083 ORTHO05D006310 1.8e-42 176.4 154 56.5
Cc09_g04250 Coffea canephora HOM05D005083 ORTHO05D006310 1.8e-42 176.4 156 62.2
FAN09G1831 Fragaria x ananassa HOM05D005083 ORTHO05D006310 1.8e-42 176.4 166 58.4
BcaB08g36773 Brassica carinata HOM05D005083 ORTHO05D006310 2.3e-42 176.0 148 58.8
FvH4_6g00120 Fragaria vesca HOM05D005083 ORTHO05D006310 3.0e-42 175.6 150 61.3
A10p22000 Brassica napus HOM05D005083 ORTHO05D006310 5.2e-42 174.9 148 60.1
Zm00001eb425980 Zea mays HOM05D005083 ORTHO05D006310 2.0e-41 172.9 154 60.4
TAR362G0022 Trochodendron aralioides HOM05D005083 ORTHO05D006310 2.6e-41 172.6 156 59.6
Dinv15379 Davidia involucrata HOM05D005083 ORTHO05D006310 1.3e-40 170.2 157 59.9
HanXRQChr03g0062021 Helianthus annuus HOM05D005083 ORTHO05D006310 1.7e-40 169.9 154 57.1
HanXRQChr14g0433021 Helianthus annuus HOM05D005083 ORTHO05D006310 1.7e-40 169.9 154 57.1
MSTRG.8186 Avicennia marina HOM05D005083 ORTHO05D006310 3.7e-40 168.7 151 57.0
Nitab4.5_0001308g0170 Nicotiana tabacum HOM05D005083 ORTHO05D006310 1.1e-39 167.2 156 59.6
Aqoxy3G04197 Aquilegia oxysepala HOM05D005083 ORTHO05D006310 3.2e-39 165.6 151 57.6
Nitab4.5_0000842g0030 Nicotiana tabacum HOM05D005083 ORTHO05D006310 4.1e-39 165.2 156 58.3
Solyc02g081460.4 Solanum lycopersicum HOM05D005083 ORTHO05D006310 4.1e-39 165.2 157 58.6
PGSC0003DMG400019714 Solanum tuberosum HOM05D005083 ORTHO05D006310 4.1e-39 165.2 157 58.6
Nitab4.5_0002233g0090 Nicotiana tabacum HOM05D005083 ORTHO05D006310 9.2e-39 164.1 156 58.3
Peaxi162Scf00253g00621 Petunia axillaris HOM05D005083 ORTHO05D006310 1.2e-38 163.7 156 57.7
Sopen02g026100 Solanum pennellii HOM05D005083 ORTHO05D006310 1.2e-38 163.7 157 58.0
CDE08G0008 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 1.6e-38 163.3 149 59.7
unitig_22.g6621 Utricularia gibba HOM05D005083 ORTHO05D006310 1.6e-38 163.3 146 57.5
CAN.G809.91 Capsicum annuum HOM05D005083 ORTHO05D006310 6.0e-38 161.4 156 58.3
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.3e-37 160.2 155 54.2
HPP92_018347 Vanilla planifolia HOM05D005083 ORTHO05D006310 1.3e-37 160.2 156 55.1
BolC9t58815H Brassica oleracea HOM05D005083 ORTHO05D006310 2.3e-37 159.5 149 55.7
Lj4A702T41 Lonicera japonica HOM05D005083 ORTHO05D006310 1.5e-36 156.8 208 47.1
BraA10t44257Z Brassica rapa HOM05D005083 ORTHO05D006310 1.4e-34 150.2 150 52.7
C09p59750 Brassica napus HOM05D005083 ORTHO05D006310 9.8e-33 144.1 133 57.1
SEGI_29727 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 1.7e-29 133.3 164 42.7
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.3e-29 132.9 165 46.7
Pp3c23_1190 Physcomitrium patens HOM05D005083 ORTHO05D006310 1.1e-28 130.6 166 44.6
SMO361G0655 Selaginella moellendorffii HOM05D005083 ORTHO05D006310 3.3e-28 129.0 153 47.1
vmacro11193 Vaccinium macrocarpon HOM05D005083 ORTHO05D006310 9.5e-28 127.5 111 59.5
EL10Ac4g10018 Beta vulgaris HOM05D005083 ORTHO05D006310 1.2e-27 127.1 151 49.7
Mapoly0036s0123 Marchantia polymorpha HOM05D005083 ORTHO05D006310 8.1e-27 124.4 157 44.6
Lsat_1_v5_gn_2_27601 Lactuca sativa HOM05D005083 ORTHO05D006310 1.2e-22 110.5 107 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1094 Anthoceros agrestis HOM05D005083 ORTHO05D006310 7.8e-22 107.8 144 43.8
CDE02G0214 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 2.4e-18 96.3 161 44.1
Pp3c13_20560 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.9e-16 89.4 176 34.1
Pp3c13_20568 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.9e-16 89.4 176 34.1
CBR_g50760 Chara braunii HOM05D005083 ORTHO05D006310 7.3e-12 74.7 141 33.3
MCO10G199 Micromonas commoda HOM05D005083 ORTHO05D006310 1.5e-09 67.0 70 37.1
HPP92_018381 Vanilla planifolia HOM05D005083 ORTHO05D006310 5.4e-07 58.5 121 38.0


User provided reference genes

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