Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30829.2 Carica papaya HOM05D000276 ORTHO05D004685 2.5e-19 97.8 51 100.0
HanXRQChr04g0094541 Helianthus annuus HOM05D000276 ORTHO05D004685 1.1e-17 92.4 51 94.1
Lj9A533G75 Lonicera japonica HOM05D000276 ORTHO05D004685 1.1e-17 92.4 51 96.1
Manes.04G146500 Manihot esculenta HOM05D000276 ORTHO05D004685 1.1e-17 92.4 51 96.1
Nn1g00678 Nelumbo nucifera HOM05D000276 ORTHO05D004685 1.1e-17 92.4 51 96.1
Lj5A34T27 Lonicera japonica HOM05D000276 ORTHO05D004685 2.4e-17 91.3 51 94.1
QL05p003940 Quercus lobata HOM05D000276 ORTHO05D004685 2.4e-17 91.3 50 94.0
TWI23G0762 Tripterygium wilfordii HOM05D000276 ORTHO05D004685 2.4e-17 91.3 51 94.1
ATR0053G015 Amborella trichopoda HOM05D000276 ORTHO05D004685 3.1e-17 90.9 51 94.1
TWI14G0200 Tripterygium wilfordii HOM05D000276 ORTHO05D004685 3.1e-17 90.9 51 94.1
CiPaw.02G134600 Carya illinoinensis HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 94.1
ClCG09G001080 Citrullus lanatus HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 90.2
COL.COLO4_18079 Corchorus olitorius HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 92.2
Dinv37855 Davidia involucrata HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 94.1
Duzib168G2398 Durio zibethinus HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 92.2
Duzib187G1428 Durio zibethinus HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 92.2
Nn6g33706 Nelumbo nucifera HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 94.1
RcHm_v2.0_Chr2g0146201 Rosa chinensis HOM05D000276 ORTHO05D004685 4.0e-17 90.5 51 94.1
CANSAT80G1285 Cannabis sativa HOM05D000276 ORTHO05D004685 5.2e-17 90.1 51 92.2
CDE02G1693 Ceratophyllum demersum HOM05D000276 ORTHO05D004685 5.2e-17 90.1 51 94.1
CDE05G0959 Ceratophyllum demersum HOM05D000276 ORTHO05D004685 5.2e-17 90.1 51 94.1
Cc06_g12310 Coffea canephora HOM05D000276 ORTHO05D004685 5.2e-17 90.1 51 92.2
CsaV3_7G034340 Cucumis sativus L. HOM05D000276 ORTHO05D004685 5.2e-17 90.1 51 88.2
Eucgr.F04398 Eucalyptus grandis HOM05D000276 ORTHO05D004685 5.2e-17 90.1 51 92.2
Gohir.A13G189800 Gossypium hirsutum HOM05D000276 ORTHO05D004685 6.8e-17 89.7 51 90.2
Gorai.013G223200 Gossypium raimondii HOM05D000276 ORTHO05D004685 6.8e-17 89.7 51 90.2
Potri.006G140400 Populus trichocarpa HOM05D000276 ORTHO05D004685 6.8e-17 89.7 51 94.1
CSS0024147 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004685 8.9e-17 89.4 51 92.2
MELO3C024343.2 Cucumis melo HOM05D000276 ORTHO05D004685 8.9e-17 89.4 51 88.2
MBI13_g00707_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004685 8.9e-17 89.4 51 92.2
Sed0004763 Sechium edule HOM05D000276 ORTHO05D004685 8.9e-17 89.4 51 88.2
Carub.0007s3134 Capsella rubella HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 90.2
ECA247G3129 Erigeron canadensis HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 90.2
ECA248G0714 Erigeron canadensis HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 90.2
FAN05G1250 Fragaria x ananassa HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 92.2
Glyma.12G147200 Glycine max HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 92.2
Gohir.D06G076500 Gossypium hirsutum HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 90.2
Gorai.010G089600 Gossypium raimondii HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 90.2
THA.LOC104808878 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 1.2e-16 89.0 51 90.2
Duzib150G0912 Durio zibethinus HOM05D000276 ORTHO05D004685 1.5e-16 88.6 50 92.0
FvH4_6g35040 Fragaria vesca HOM05D000276 ORTHO05D004685 1.5e-16 88.6 51 92.2
FAN02G3049 Fragaria x ananassa HOM05D000276 ORTHO05D004685 1.5e-16 88.6 51 92.2
FAN09G1096 Fragaria x ananassa HOM05D000276 ORTHO05D004685 1.5e-16 88.6 51 92.2
FAN14G5418 Fragaria x ananassa HOM05D000276 ORTHO05D004685 1.5e-16 88.6 51 92.2
Oeu007419.1 Olea europaea HOM05D000276 ORTHO05D004685 1.5e-16 88.6 51 92.2
arahy.Tifrunner.gnm1.ann1.1W9MYV Arachis hypogaea HOM05D000276 ORTHO05D004685 2.0e-16 88.2 51 90.2
arahy.Tifrunner.gnm1.ann1.NTJB5Y Arachis hypogaea HOM05D000276 ORTHO05D004685 2.0e-16 88.2 51 90.2
CiPaw.01G216900 Carya illinoinensis HOM05D000276 ORTHO05D004685 2.0e-16 88.2 51 92.2
Ca_02932_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004685 2.0e-16 88.2 51 90.2
Dinv20416 Davidia involucrata HOM05D000276 ORTHO05D004685 2.0e-16 88.2 50 94.0
Gohir.A06G077500 Gossypium hirsutum HOM05D000276 ORTHO05D004685 2.0e-16 88.2 51 90.2
PGR119G2314 Punica granatum HOM05D000276 ORTHO05D004685 2.0e-16 88.2 51 90.2
Aa31sc209G60 Aethionema arabicum HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 90.2
Lj3g0028021 Lotus japonicus HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 90.2
MD09G1179900 Malus domestica HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 92.2
MD17G1165500 Malus domestica HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 92.2
Phvul.011G155200 Phaseolus vulgaris HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 90.2
TAR383G0186 Trochodendron aralioides HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 92.2
VMungo1127G1993 Vigna mungo HOM05D000276 ORTHO05D004685 2.6e-16 87.8 51 90.2
Actinidia30231 Actinidia chinensis HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 92.2
Aqoxy3G00422 Aquilegia oxysepala HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 92.2
CAN.G1661.16 Capsicum annuum HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 90.2
Migut.A01118 Erythranthe guttata HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 90.2
Lsat_1_v5_gn_1_37980 Lactuca sativa HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 92.2
Peaxi162Scf00928g00131 Petunia axillaris HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 88.2
Hund26042 Selenicereus undatus HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 90.2
SGA_v2.0_scaffold34G13918 Striga asiatica HOM05D000276 ORTHO05D004685 3.4e-16 87.4 51 90.2
MSTRG.14320 Avicennia marina HOM05D000276 ORTHO05D004685 4.4e-16 87.0 51 90.2
Hund08823 Selenicereus undatus HOM05D000276 ORTHO05D004685 4.4e-16 87.0 51 90.2
THA.LOC104815341 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 4.4e-16 87.0 51 88.2
Aqoxy7G04096 Aquilegia oxysepala HOM05D000276 ORTHO05D004685 5.8e-16 86.7 51 90.2
Glyma.06G254200 Glycine max HOM05D000276 ORTHO05D004685 5.8e-16 86.7 51 88.2
Nitab4.5_0000073g0160 Nicotiana tabacum HOM05D000276 ORTHO05D004685 5.8e-16 86.7 51 88.2
Sed0020903 Sechium edule HOM05D000276 ORTHO05D004685 5.8e-16 86.7 51 86.3
Thecc.09G074900 Theobroma cacao HOM05D000276 ORTHO05D004685 5.8e-16 86.7 51 88.2
Actinidia26018 Actinidia chinensis HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 90.2
Ah.09g229270 Amaranthus hybridus HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
AL7G44410 Arabidopsis lyrata HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
AT5G35590 Arabidopsis thaliana HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
BcaB08g34519 Brassica carinata HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 86.3
A03p44820 Brassica napus HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 86.3
BolC3t17851H Brassica oleracea HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 86.3
BraA03t13619Z Brassica rapa HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 86.3
Hma1.2p1_0291F.1_g114895 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 7.6e-16 86.3 50 86.0
Manes.03G041500 Manihot esculenta HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 90.2
Medtr8g464460 Medicago truncatula HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
Nitab4.5_0010916g0010 Nicotiana tabacum HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 86.3
Oeu000283.1 Olea europaea HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 90.2
Potri.006G110800 Populus trichocarpa HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 90.2
Potri.016G139600 Populus trichocarpa HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 92.2
Prupe.3G038700 Prunus persica HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 90.2
Rhsim03G0226900 Rhododendron simsii HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 90.2
Solyc12g009140.3 Solanum lycopersicum HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
PGSC0003DMG400002904 Solanum tuberosum HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
GSVIVG01016731001 Vitis vinifera HOM05D000276 ORTHO05D004685 7.6e-16 86.3 51 88.2
Atru.chr1.4042 Acer truncatum HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 88.2
MSTRG.15122 Avicennia marina HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 88.2
BcaB06g26863 Brassica carinata HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
BcaC01g03135 Brassica carinata HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
A07p06390 Brassica napus HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
C03p55710 Brassica napus HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
C07p09530 Brassica napus HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
BraA07t28432Z Brassica rapa HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
ClCG07G014530 Citrullus lanatus HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 90.2
Sp3g24290 Schrenkiella parvula HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
TPR.G14126 Trifolium pratense HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
TPR.G25332 Trifolium pratense HOM05D000276 ORTHO05D004685 9.9e-16 85.9 51 86.3
Cfa003519 Carpinus fangiana HOM05D000276 ORTHO05D004685 1.3e-15 85.5 51 90.2
THA.LOC104826597 Tarenaya hassleriana HOM05D000276 ORTHO05D004685 1.3e-15 85.5 51 86.3
HPP92_016598 Vanilla planifolia HOM05D000276 ORTHO05D004685 1.3e-15 85.5 51 90.2
Atru.chr7.1724 Acer truncatum HOM05D000276 ORTHO05D004685 1.7e-15 85.1 51 88.2
AUR62025264 Chenopodium quinoa HOM05D000276 ORTHO05D004685 1.7e-15 85.1 51 88.2
AUR62028267 Chenopodium quinoa HOM05D000276 ORTHO05D004685 1.7e-15 85.1 51 88.2
Psat1g128160 Pisum sativum HOM05D000276 ORTHO05D004685 1.7e-15 85.1 51 88.2
CARHR103470 Cardamine hirsuta HOM05D000276 ORTHO05D004685 2.2e-15 84.7 51 86.3
Ciclev10010323m.g Citrus clementina HOM05D000276 ORTHO05D004685 2.2e-15 84.7 51 86.3
Thhalv10002649m.g Eutrema salsugineum HOM05D000276 ORTHO05D004685 2.2e-15 84.7 51 84.3
Sopen12g004090 Solanum pennellii HOM05D000276 ORTHO05D004685 2.2e-15 84.7 51 86.3
SGA_v2.0_scaffold70G23476 Striga asiatica HOM05D000276 ORTHO05D004685 2.2e-15 84.7 51 90.2
unitig_37.g12874 Utricularia gibba HOM05D000276 ORTHO05D004685 2.2e-15 84.7 51 86.3
AL3G43370 Arabidopsis lyrata HOM05D000276 ORTHO05D004685 2.9e-15 84.3 51 86.3
AT2G05840 Arabidopsis thaliana HOM05D000276 ORTHO05D004685 2.9e-15 84.3 51 86.3
BcaC06g35940 Brassica carinata HOM05D000276 ORTHO05D004685 2.9e-15 84.3 51 84.3
BolC7t41382H Brassica oleracea HOM05D000276 ORTHO05D004685 2.9e-15 84.3 51 84.3
TPR.G11723 Trifolium pratense HOM05D000276 ORTHO05D004685 2.9e-15 84.3 51 86.3
Medtr2g060830 Medicago truncatula HOM05D000276 ORTHO05D004685 3.8e-15 84.0 51 86.3
PSO135G0155 Papaver somniferum HOM05D000276 ORTHO05D004685 3.8e-15 84.0 51 88.2
PSO724G0707 Papaver somniferum HOM05D000276 ORTHO05D004685 3.8e-15 84.0 51 88.2
Sabra06G0086100 Salix brachista HOM05D000276 ORTHO05D004685 3.8e-15 84.0 51 88.2
SalBow7G1398 Salvia bowleyana HOM05D000276 ORTHO05D004685 6.4e-15 83.2 51 86.3
AagrBONN_evm.TU.Sc2ySwM_117.2618 Anthoceros agrestis HOM05D000276 ORTHO05D004685 1.1e-14 82.4 51 82.4
Ciclev10026352m.g Citrus clementina HOM05D000276 ORTHO05D004685 1.1e-14 82.4 51 86.3
Lalb_Chr19g0134491 Lupinus albus HOM05D000276 ORTHO05D004685 1.1e-14 82.4 51 86.3
SMO348G0074 Selaginella moellendorffii HOM05D000276 ORTHO05D004685 1.9e-14 81.6 51 80.4
DCAR_016110 Daucus carota HOM05D000276 ORTHO05D004685 2.4e-14 81.3 51 84.3
Lalb_Chr01g0006421 Lupinus albus HOM05D000276 ORTHO05D004685 2.4e-14 81.3 51 84.3
Zm00001eb401790 Zea mays HOM05D000276 ORTHO05D004685 2.4e-14 81.3 50 86.0
Pp3c24_20680 Physcomitrium patens HOM05D000276 ORTHO05D004685 4.2e-14 80.5 51 84.3
Sabra06G0109600 Salix brachista HOM05D000276 ORTHO05D004685 4.2e-14 80.5 54 83.3
Os03g0180400 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D004685 5.4e-14 80.1 50 84.0
Pp3c8_24770 Physcomitrium patens HOM05D000276 ORTHO05D004685 5.4e-14 80.1 51 82.4
Zm00001eb005960 Zea mays HOM05D000276 ORTHO05D004685 5.4e-14 80.1 50 84.0
vmacro06348 Vaccinium macrocarpon HOM05D000276 ORTHO05D004685 9.2e-14 79.3 50 84.0
Hma1.2p1_0229F.1_g096660 Hydrangea macrophylla HOM05D002249 ORTHO05D002443 1.2e-13 79.0 47 83.0
Haze_16048 Corylus avellana HOM05D002249 ORTHO05D004685 2.7e-13 77.8 47 87.2
Dinv20417 Davidia involucrata HOM05D000139 ORTHO05D000103 1.7e-12 75.1 48 81.2
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 1.9e-11 71.6 47 78.7
Mapoly0006s0307 Marchantia polymorpha HOM05D000276 ORTHO05D004685 3.3e-11 70.9 51 74.5
Hma1.2p1_0686F.1_g203320 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 9.6e-11 69.3 84 54.8
Hma1.2p1_2485F.1_g323070 Hydrangea macrophylla HOM05D000276 ORTHO05D004685 9.6e-11 69.3 84 54.8
Pp3c2_5060 Physcomitrium patens HOM05D000276 ORTHO05D004685 2.8e-10 67.8 51 74.5
CBR_g23123 Chara braunii HOM05D000276 ORTHO05D004685 6.2e-10 66.6 51 70.6
MCO09G066 Micromonas commoda HOM05D000276 ORTHO05D004685 2.0e-08 61.6 51 60.8
PRCOL_00000811 Prasinoderma coloniale HOM05D000276 ORTHO05D004685 2.6e-08 61.2 50 64.0
Zm00001eb327410 Zea mays HOM05D000276 ORTHO05D004685 4.4e-08 60.5 46 65.2
Cre17.g705400 Chlamydomonas reinhardtii HOM05D000276 ORTHO05D004685 1.7e-07 58.5 55 58.2
Peaxi162Scf00932g00007 Petunia axillaris HOM05D000276 ORTHO05D004685 1.7e-07 58.5 37 78.4


User provided reference genes

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