Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.4e-102 375.2 211 100.0
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.8e-64 249.2 212 72.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.4e-63 246.9 229 64.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.0e-63 244.2 229 67.2
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.0e-63 244.2 229 67.2
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.6e-62 242.7 231 67.1
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 5.8e-62 241.5 229 66.8
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.9e-62 240.7 229 66.8
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.8e-61 238.8 214 69.2
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.4e-60 236.9 229 66.8
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.9e-60 236.5 226 67.3
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 5.4e-60 235.0 211 67.8
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.6e-59 233.4 217 65.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 6.0e-59 231.5 214 65.9
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 3.0e-58 229.2 214 66.4
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 8.7e-58 227.6 226 63.7
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 8.7e-58 227.6 211 64.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.9e-57 226.5 211 67.3
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.5e-57 226.1 214 66.4
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 3.3e-57 225.7 221 62.9
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 7.4e-57 224.6 219 64.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 9.6e-57 224.2 212 66.0
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.3e-56 223.8 217 65.9
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.6e-56 223.4 213 64.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.6e-56 223.4 212 64.6
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 8.1e-56 221.1 211 64.9
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.1e-55 220.7 223 64.1
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.4e-55 220.3 219 63.9
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.4e-55 220.3 212 62.7
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.4e-55 219.5 214 63.1
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.1e-55 219.2 212 65.6
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.0e-54 216.5 217 64.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.4e-54 215.7 221 61.1
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.4e-54 215.7 221 61.1
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 5.8e-54 214.9 218 61.9
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.8e-54 214.9 211 62.1
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 7.6e-54 214.5 212 65.1
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 7.6e-54 214.5 212 63.2
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.9e-53 212.6 215 64.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 3.8e-53 212.2 214 65.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.8e-53 212.2 222 62.2
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.9e-53 211.8 213 62.0
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.5e-53 211.5 223 60.1
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-52 210.7 235 60.9
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.4e-52 210.3 199 66.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.4e-52 210.3 218 63.8
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.9e-52 209.9 216 61.6
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 5.5e-52 208.4 217 61.8
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.7e-51 206.1 222 58.1
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.7e-51 206.1 222 58.1
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.7e-51 206.1 211 61.1
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.5e-51 205.7 219 60.3
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 3.5e-51 205.7 210 63.3
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 4.6e-51 205.3 215 60.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 7.9e-51 204.5 236 58.9
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 7.9e-51 204.5 236 58.9
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 7.9e-51 204.5 126 84.9
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.3e-50 203.8 195 63.6
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.8e-50 203.4 211 63.5
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 3.9e-50 202.2 205 64.9
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 5.1e-50 201.8 126 84.1
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.1e-50 201.8 127 83.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 8.7e-50 201.1 215 60.9
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.1e-49 200.7 220 62.3
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.1e-49 200.7 213 62.4
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.5e-49 200.3 215 59.5
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 3.3e-49 199.1 212 61.3
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 4.3e-49 198.7 211 58.3
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 5.7e-49 198.4 209 64.6
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 7.4e-49 198.0 127 81.9
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 9.6e-49 197.6 214 59.8
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.3e-48 197.2 224 58.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.3e-48 197.2 126 79.4
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.6e-48 196.8 217 59.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.6e-48 196.8 127 81.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 8.2e-48 194.5 213 60.6
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.1e-47 194.1 213 61.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.4e-47 193.7 216 58.3
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.8e-47 193.4 235 55.7
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.4e-47 193.0 211 62.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 3.1e-47 192.6 216 57.4
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.1e-47 192.6 126 82.5
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.1e-47 192.2 211 57.8
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 5.3e-47 191.8 127 78.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 6.9e-47 191.4 126 81.7
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 9.0e-47 191.0 127 77.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 9.0e-47 191.0 215 55.3
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.0e-46 189.9 210 58.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 3.4e-46 189.1 120 81.7
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 4.5e-46 188.7 127 77.2
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 4.5e-46 188.7 237 54.0
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 5.8e-46 188.3 217 57.6
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 7.6e-46 188.0 227 57.3
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.0e-45 187.6 125 76.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.3e-45 187.2 125 75.2
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.7e-45 186.8 214 56.1
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.8e-45 185.7 213 57.3
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 5.0e-45 185.3 211 57.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 5.0e-45 185.3 210 57.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.9e-44 183.3 224 56.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.2e-44 182.2 229 52.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 4.2e-44 182.2 211 55.0
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 7.1e-44 181.4 209 56.5
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 9.3e-44 181.0 127 74.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-43 180.6 232 51.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.6e-43 180.3 194 61.3
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.7e-43 179.5 256 52.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.3e-42 177.2 209 55.5
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 3.0e-42 176.0 208 55.8
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.9e-41 173.3 198 57.1
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.3e-41 172.6 106 85.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.3e-40 168.3 212 53.3
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 8.2e-40 167.9 109 82.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.1e-39 167.5 211 52.1
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.4e-39 167.2 105 82.9
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.8e-39 166.8 134 67.9
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 6.9e-39 164.9 215 52.6
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.0e-38 163.3 161 61.5
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.7e-38 161.4 172 62.2
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.9e-36 156.8 195 52.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.9e-36 156.8 195 52.3
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.9e-36 156.8 209 50.7
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 4.6e-35 152.1 170 55.3
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 4.6e-35 152.1 175 57.7
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.8e-34 150.2 95 78.9
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.3e-33 146.0 192 52.6
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.2e-32 143.3 87 87.4
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 3.7e-32 142.5 113 69.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 4.8e-32 142.1 126 59.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.4e-31 139.8 101 74.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.1e-31 139.4 193 51.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 5.3e-31 138.7 151 54.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 6.9e-31 138.3 125 62.4
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-30 136.3 213 44.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 4.5e-30 135.6 208 44.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 5.9e-30 135.2 128 60.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.7e-30 134.8 109 68.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-29 134.0 195 51.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 4.2e-28 129.0 211 43.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-27 125.9 211 47.4
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.1e-27 125.2 204 46.1
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.3e-24 117.5 103 58.3
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 9.1e-23 111.3 150 53.3
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.1e-23 111.3 139 56.8
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 2.0e-22 110.2 139 56.1
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 7.7e-22 108.2 168 50.0
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 5.0e-21 105.5 226 40.7
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.9e-20 103.6 82 68.3
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-18 97.8 79 65.8
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.4e-15 87.4 74 60.8
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.2e-14 84.3 65 64.6
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.7e-13 80.5 48 79.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 5.0e-13 79.0 112 43.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.0e-10 71.2 115 37.4
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.5e-09 67.4 106 51.9
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.0e-09 67.0 111 42.3
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 7.5e-09 65.1 41 68.3
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.3e-08 64.3 109 48.6
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-08 63.9 41 78.0
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 2.8e-08 63.2 109 50.5
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.8e-08 62.4 37 73.0
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 5.9e-06 55.5 34 73.5


User provided reference genes

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