Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 2872.4 1459 100.0
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1834.7 1380 66.5
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 1807.3 1379 66.4
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 1801.2 1381 66.8
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 1798.5 1381 66.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1792.7 1379 65.7
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1783.1 1382 64.8
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 1776.1 1378 66.0
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1776.1 1379 65.6
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1775.8 1382 64.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1769.2 1384 65.0
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1761.5 1384 63.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1758.8 1379 65.1
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 1754.6 1379 64.7
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1741.5 1391 63.8
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1729.5 1387 63.7
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1721.1 1378 63.4
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1714.1 1378 63.2
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1709.1 1379 62.9
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1692.6 1385 63.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1691.0 1381 63.0
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1682.5 1383 62.4
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1671.0 1383 61.6
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1669.4 1383 61.5
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1669.1 1389 62.5
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 1668.7 1383 61.4
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1668.7 1383 61.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1663.3 1383 61.3
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1623.6 1382 60.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 1617.1 1381 59.5
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1612.0 1381 61.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 1608.6 1394 60.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1605.5 1382 59.3
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 1604.7 1383 59.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 1599.3 1381 58.9
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 1598.6 1382 59.1
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 1597.8 1381 58.7
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1593.2 1384 58.7
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1583.2 1388 57.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 1582.4 1384 59.2
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1581.2 1380 58.6
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 1579.7 1391 57.9
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 1579.7 1394 57.7
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1571.6 1383 58.4
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1569.7 1383 58.3
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1564.3 1391 58.6
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1560.0 1416 58.3
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1559.3 1391 58.4
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1555.4 1416 58.4
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1546.2 1418 58.0
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1541.2 1384 59.5
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1541.2 1384 59.5
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 1535.0 1353 57.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1534.6 1385 59.0
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1528.8 1417 57.1
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1524.2 1416 57.8
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1519.6 1419 58.1
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 1518.4 1290 60.7
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1517.7 1419 58.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1515.4 1410 57.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1505.0 1390 57.4
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1486.1 1383 56.4
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1484.5 1383 56.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1481.5 1382 56.3
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1474.5 1386 57.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 1469.1 1052 70.6
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 1466.8 1392 55.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 1463.4 1381 55.8
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1445.6 1413 54.6
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 1436.4 1388 55.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 1422.9 1436 53.6
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1421.0 1389 54.6
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 1419.4 1432 52.2
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1418.7 1414 54.1
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1413.3 1435 53.4
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1412.9 1384 54.9
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 1407.1 1383 54.4
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1401.7 1389 53.5
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 1401.0 1386 52.4
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 1399.0 1394 53.7
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 1396.7 1396 54.3
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 1392.9 1394 53.2
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 1390.9 1394 52.4
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1382.5 1392 53.7
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1364.4 1397 53.0
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1358.2 1397 53.0
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 1354.3 1389 51.5
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 1348.2 1391 51.8
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1347.0 1428 52.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 1335.5 1402 50.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1327.8 1391 50.9
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1326.2 1400 50.7
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 1315.4 1389 50.2
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1211.1 1208 52.8
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1208.7 1343 48.5
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1163.3 1409 46.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1106.7 1389 44.7
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 5.2e-303 1045.0 1387 43.3
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 2.4e-300 1036.2 1400 42.9
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 7.9e-283 978.0 778 62.6
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.7e-224 784.3 801 52.1
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.0e-209 734.2 1420 34.8
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 2.9e-168 597.4 499 61.1
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 4.6e-166 590.1 416 71.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.0e-165 589.0 416 71.2
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.1e-164 585.5 416 70.7
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.1e-130 472.6 1452 28.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.1e-130 472.6 450 56.0
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 7.2e-119 433.3 1452 25.3
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.5e-111 408.3 1422 26.0
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.4e-90 339.3 316 54.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 4.1e-82 311.2 1468 23.3
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 3.0e-64 251.9 446 36.3
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.6e-55 221.1 349 39.3
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 3.4e-52 211.8 166 68.7
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.1e-50 206.8 250 45.2
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.5e-49 201.8 277 44.8
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 4.0e-45 188.3 143 64.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 5.3e-45 188.0 135 72.6
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 5.3e-45 188.0 314 38.2
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 5.5e-42 177.9 123 70.7
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 3.9e-40 171.8 123 69.9
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 9.6e-39 167.2 131 64.9
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-37 163.7 137 64.2
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.8e-37 162.9 325 35.7
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.0e-36 159.5 193 46.6
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.5e-31 143.3 127 54.3
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 2.8e-30 139.0 98 68.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.7e-25 122.5 291 30.6
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 5.1e-24 118.2 194 34.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.8e-24 117.5 83 71.1
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 1.4e-16 93.6 97 46.4
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.8e-14 85.9 84 50.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.1e-13 84.0 215 30.2
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.4e-08 67.0 128 35.2
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.4e-08 67.0 65 47.7
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 3.0e-08 65.9 42 81.0
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 4.0e-08 65.5 86 48.8
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.6e-07 62.8 107 34.6
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 3.7e-06 58.9 52 51.9
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 3.7e-06 58.9 52 51.9
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 3.7e-06 58.9 52 51.9


User provided reference genes

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