Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016960 Citrullus lanatus HOM05D000189 ORTHO05D008543 3.8e-165 584.7 283 100.0
MELO3C026358.2 Cucumis melo HOM05D000189 ORTHO05D008543 3.5e-94 349.0 189 88.9
CsaV3_4G032580 Cucumis sativus L. HOM05D000189 ORTHO05D008543 7.5e-89 331.3 189 85.2
Sed0021246 Sechium edule HOM05D000189 ORTHO05D008543 4.3e-68 262.3 187 72.7
Actinidia35092 Actinidia chinensis HOM05D000189 ORTHO05D008543 2.9e-48 196.4 178 61.8
Cfa023197 Carpinus fangiana HOM05D000189 ORTHO05D008543 3.8e-48 196.1 176 59.7
MD09G1144200 Malus domestica HOM05D000189 ORTHO05D008543 3.8e-48 196.1 163 63.2
RcHm_v2.0_Chr2g0153071 Rosa chinensis HOM05D000189 ORTHO05D008543 8.4e-48 194.9 169 62.7
Haze_13663 Corylus avellana HOM05D000189 ORTHO05D008543 1.4e-47 194.1 176 59.1
FAN02G3098 Fragaria x ananassa HOM05D000189 ORTHO05D008543 4.2e-47 192.6 164 59.8
QL04p063684 Quercus lobata HOM05D000189 ORTHO05D008543 7.1e-47 191.8 186 58.6
QL04p063839 Quercus lobata HOM05D000189 ORTHO05D008543 1.2e-46 191.0 166 62.0
FvH4_6g39230 Fragaria vesca HOM05D000189 ORTHO05D008543 2.1e-46 190.3 165 60.6
FAN14G3158 Fragaria x ananassa HOM05D000189 ORTHO05D008543 2.1e-46 190.3 165 60.6
CANSAT64G0639 Cannabis sativa HOM05D000189 ORTHO05D008543 2.7e-46 189.9 188 58.0
Rhsim12G0189000 Rhododendron simsii HOM05D000189 ORTHO05D008543 3.5e-46 189.5 175 58.9
FAN05G5772 Fragaria x ananassa HOM05D000189 ORTHO05D008543 6.0e-46 188.7 165 60.0
Prupe.3G183700 Prunus persica HOM05D000189 ORTHO05D008543 6.0e-46 188.7 169 60.4
Gorai.004G062700 Gossypium raimondii HOM05D000189 ORTHO05D008543 7.8e-46 188.3 174 60.3
Nn7g38375 Nelumbo nucifera HOM05D000189 ORTHO05D008543 7.8e-46 188.3 172 58.7
Atru.chr8.1024 Acer truncatum HOM05D000189 ORTHO05D008543 1.3e-45 187.6 174 57.5
Atru.chr8.1034 Acer truncatum HOM05D000189 ORTHO05D008543 1.3e-45 187.6 174 57.5
Aqoxy1G01367 Aquilegia oxysepala HOM05D000189 ORTHO05D008543 2.3e-45 186.8 161 59.6
Ciclev10011722m.g Citrus clementina HOM05D000189 ORTHO05D008543 2.3e-45 186.8 165 62.4
Gohir.D08G060600 Gossypium hirsutum HOM05D000189 ORTHO05D008543 5.1e-45 185.7 174 59.2
TWI60G0179 Tripterygium wilfordii HOM05D000189 ORTHO05D008543 5.1e-45 185.7 192 56.2
Lalb_Chr03g0040961 Lupinus albus HOM05D000189 ORTHO05D008543 6.6e-45 185.3 163 58.9
Nitab4.5_0000170g0240 Nicotiana tabacum HOM05D000189 ORTHO05D008543 6.6e-45 185.3 189 56.1
Duzib138G0116 Durio zibethinus HOM05D000189 ORTHO05D008543 8.7e-45 184.9 176 56.2
CiPaw.03G108500 Carya illinoinensis HOM05D000189 ORTHO05D008543 1.1e-44 184.5 173 60.1
Gohir.A08G050800 Gossypium hirsutum HOM05D000189 ORTHO05D008543 1.1e-44 184.5 167 58.7
Peaxi162Scf01347g00140 Petunia axillaris HOM05D000189 ORTHO05D008543 1.1e-44 184.5 189 52.9
CAN.G275.2 Capsicum annuum HOM05D000189 ORTHO05D008543 1.5e-44 184.1 189 55.0
TAR626G0190 Trochodendron aralioides HOM05D000189 ORTHO05D008543 1.5e-44 184.1 175 57.1
Oeu027258.2 Olea europaea HOM05D000189 ORTHO05D008543 3.3e-44 183.0 166 59.0
Psat3g152720 Pisum sativum HOM05D000189 ORTHO05D008543 4.3e-44 182.6 162 57.4
Dinv10199 Davidia involucrata HOM05D000189 ORTHO05D008543 5.6e-44 182.2 179 57.5
arahy.Tifrunner.gnm1.ann1.0TPK9J Arachis hypogaea HOM05D000189 ORTHO05D008543 7.3e-44 181.8 170 57.6
CSS0030038 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D008543 9.6e-44 181.4 143 65.0
Eucgr.K01353 Eucalyptus grandis HOM05D000189 ORTHO05D008543 9.6e-44 181.4 163 57.7
Lj1C845T8 Lonicera japonica HOM05D000189 ORTHO05D008543 9.6e-44 181.4 174 58.6
Manes.02G091100 Manihot esculenta HOM05D000189 ORTHO05D008543 9.6e-44 181.4 173 55.5
Sp2g24180 Schrenkiella parvula HOM05D000189 ORTHO05D008543 9.6e-44 181.4 181 55.8
PSO384G2933 Papaver somniferum HOM05D000189 ORTHO05D008543 1.3e-43 181.0 161 57.8
Ca_07428_v3 Cicer arietinum L. HOM05D000189 ORTHO05D008543 1.6e-43 180.6 154 59.1
Glyma.08G342500 Glycine max HOM05D000189 ORTHO05D008543 1.6e-43 180.6 181 54.7
Phvul.008G138200 Phaseolus vulgaris HOM05D000189 ORTHO05D008543 2.8e-43 179.9 173 54.9
Potri.004G000600 Populus trichocarpa HOM05D000189 ORTHO05D008543 2.8e-43 179.9 177 56.5
Sopen07g022550 Solanum pennellii HOM05D000189 ORTHO05D008543 2.8e-43 179.9 194 54.1
Solyc07g042970.4 Solanum lycopersicum HOM05D000189 ORTHO05D008543 4.8e-43 179.1 164 58.5
THA.LOC104801043 Tarenaya hassleriana HOM05D000189 ORTHO05D008543 6.2e-43 178.7 176 55.7
VMungo1127G2182 Vigna mungo HOM05D000189 ORTHO05D008543 8.1e-43 178.3 167 59.3
Thecc.01G175700 Theobroma cacao HOM05D000189 ORTHO05D008543 1.1e-42 177.9 157 60.5
BcaC06g33201 Brassica carinata HOM05D000189 ORTHO05D008543 1.4e-42 177.6 176 56.2
BraA03t13780Z Brassica rapa HOM05D000189 ORTHO05D008543 1.4e-42 177.6 176 56.2
COL.COLO4_19999 Corchorus olitorius HOM05D000189 ORTHO05D008543 1.4e-42 177.6 156 59.6
Lj1g0007746 Lotus japonicus HOM05D000189 ORTHO05D008543 1.8e-42 177.2 155 57.4
PSO339G1220 Papaver somniferum HOM05D000189 ORTHO05D008543 1.8e-42 177.2 161 57.1
vmacro19219 Vaccinium macrocarpon HOM05D000189 ORTHO05D008543 1.8e-42 177.2 180 54.4
HPP92_005949 Vanilla planifolia HOM05D000189 ORTHO05D008543 2.4e-42 176.8 162 56.8
SGA_v2.0_scaffold119G32752 Striga asiatica HOM05D000189 ORTHO05D008543 3.1e-42 176.4 187 53.5
Peaxi162Scf00461g01117 Petunia axillaris HOM05D000189 ORTHO05D008543 5.3e-42 175.6 154 58.4
Medtr7g047550 Medicago truncatula HOM05D000189 ORTHO05D008543 6.9e-42 175.3 184 51.6
Medtr7g451750 Medicago truncatula HOM05D000189 ORTHO05D008543 6.9e-42 175.3 184 51.6
Sabra04G0000200 Salix brachista HOM05D000189 ORTHO05D008543 9.0e-42 174.9 176 55.7
Thhalv10004213m.g Eutrema salsugineum HOM05D000189 ORTHO05D008543 1.2e-41 174.5 187 52.4
MBI02_g25820_MAGBIO Magnolia biondii HOM05D000189 ORTHO05D008543 1.2e-41 174.5 162 58.0
Hund04391 Selenicereus undatus HOM05D000189 ORTHO05D008543 2.0e-41 173.7 170 53.5
AL8G37490 Arabidopsis lyrata HOM05D000189 ORTHO05D008543 2.6e-41 173.3 177 55.4
A03p46560 Brassica napus HOM05D000189 ORTHO05D008543 2.6e-41 173.3 176 55.1
Aa31LG11G2420 Aethionema arabicum HOM05D000189 ORTHO05D008543 3.4e-41 172.9 162 56.2
SalBow1G1916 Salvia bowleyana HOM05D000189 ORTHO05D008543 5.8e-41 172.2 169 58.0
SalBow3G2186 Salvia bowleyana HOM05D000189 ORTHO05D008543 5.8e-41 172.2 169 58.0
BcaNung02612 Brassica carinata HOM05D000189 ORTHO05D008543 7.6e-41 171.8 187 53.5
C07p44630 Brassica napus HOM05D000189 ORTHO05D008543 7.6e-41 171.8 187 53.5
BolC7t44986H Brassica oleracea HOM05D000189 ORTHO05D008543 7.6e-41 171.8 187 53.5
Migut.H01259 Erythranthe guttata HOM05D000189 ORTHO05D008543 7.6e-41 171.8 153 58.8
AUR62003547 Chenopodium quinoa HOM05D000189 ORTHO05D008543 9.9e-41 171.4 152 58.6
Carub.0008s2157 Capsella rubella HOM05D000189 ORTHO05D008543 1.7e-40 170.6 177 55.4
Cpa.g.sc332.5 Carica papaya HOM05D000189 ORTHO05D008543 1.7e-40 170.6 195 49.7
Cc01_g04970 Coffea canephora HOM05D000189 ORTHO05D008543 7.1e-39 165.2 174 54.0
CDE02G0382 Ceratophyllum demersum HOM05D000189 ORTHO05D008543 1.2e-38 164.5 140 56.4
HanXRQChr16g0519521 Helianthus annuus HOM05D000189 ORTHO05D008543 3.5e-38 162.9 161 52.2
EL10Ac6g15331 Beta vulgaris HOM05D000189 ORTHO05D008543 6.0e-38 162.2 172 51.7
Lsat_1_v5_gn_4_46020 Lactuca sativa HOM05D000189 ORTHO05D008543 2.3e-37 160.2 155 56.1
Ah.03g147740 Amaranthus hybridus HOM05D000189 ORTHO05D008543 6.7e-37 158.7 163 50.3
Sc07g0001900 Simmondsia chinensis HOM05D000189 ORTHO05D008543 6.7e-37 158.7 153 53.6
Nitab4.5_0000807g0180 Nicotiana tabacum HOM05D000189 ORTHO05D008543 2.5e-36 156.8 146 59.6
Zm00001eb320310 Zea mays HOM05D000189 ORTHO05D008543 2.5e-36 156.8 135 59.3
Os09g0560450 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D008543 9.6e-36 154.8 162 50.6
DCAR_023873 Daucus carota HOM05D000189 ORTHO05D008543 3.7e-35 152.9 165 53.3
ECA234G4628 Erigeron canadensis HOM05D000189 ORTHO05D008543 2.4e-34 150.2 155 50.3
ATR0763G088 Amborella trichopoda HOM05D000189 ORTHO05D008543 7.6e-33 145.2 121 61.2
SEGI_12068 Sequoiadendron giganteum HOM05D000189 ORTHO05D008543 3.9e-29 132.9 144 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3291 Anthoceros agrestis HOM05D000189 ORTHO05D008543 1.3e-24 117.9 129 49.6
Mapoly0026s0073 Marchantia polymorpha HOM05D000189 ORTHO05D008543 6.0e-22 109.0 143 42.0
CDE05G1847 Ceratophyllum demersum HOM05D000189 ORTHO05D008543 1.3e-21 107.8 164 40.2
Pp3c10_6070 Physcomitrium patens HOM05D000189 ORTHO05D008543 4.3e-20 102.8 173 38.2
SMO367G0649 Selaginella moellendorffii HOM05D000189 ORTHO05D008543 1.4e-18 97.8 138 35.5
PGR044G2455 Punica granatum HOM05D000189 ORTHO05D008543 4.1e-18 96.3 233 36.9
Os04g0226400 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D008543 9.0e-18 95.1 75 56.0
AUR62017861 Chenopodium quinoa HOM05D000189 ORTHO05D008543 3.2e-15 86.7 52 75.0
Zm00001eb104700 Zea mays HOM05D000189 ORTHO05D008543 9.4e-15 85.1 93 49.5
TPR.G10187 Trifolium pratense HOM05D000189 ORTHO05D008543 5.9e-09 65.9 44 65.9
vmacro16556 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 2.2e-08 63.9 184 31.5
arahy.Tifrunner.gnm1.ann1.WN2TW1 Arachis hypogaea HOM05D000189 ORTHO05D004078 5.0e-08 62.8 157 33.8
arahy.Tifrunner.gnm1.ann1.56CBQX Arachis hypogaea HOM05D000189 ORTHO05D004078 6.5e-08 62.4 157 33.8
SGA_v2.0_scaffold163G38063 Striga asiatica HOM05D000189 ORTHO05D008437 8.5e-08 62.0 196 29.1
TAR625G1514 Trochodendron aralioides HOM05D000189 ORTHO05D004078 8.5e-08 62.0 132 33.3
DCAR_019990 Daucus carota HOM05D000189 ORTHO05D004078 1.1e-07 61.6 132 33.3
AagrBONN_evm.TU.Sc2ySwM_368.1534 Anthoceros agrestis HOM05D000189 ORTHO05D000474 1.4e-07 61.2 164 32.3
COL.COLO4_22984 Corchorus olitorius HOM05D000189 ORTHO05D000474 1.4e-07 61.2 159 30.8
Sed0024513 Sechium edule HOM05D000189 ORTHO05D008437 1.4e-07 61.2 163 32.5
CsaV3_5G032270 Cucumis sativus L. HOM05D000189 ORTHO05D008437 1.9e-07 60.8 195 31.3
CAN.G1850.2 Capsicum annuum HOM05D000189 ORTHO05D000474 3.2e-07 60.1 152 31.6
CiPaw.06G080200 Carya illinoinensis HOM05D000189 ORTHO05D008437 3.2e-07 60.1 164 31.7
CDE06G0887 Ceratophyllum demersum HOM05D000189 ORTHO05D000474 4.2e-07 59.7 154 33.1
Sed0002027 Sechium edule HOM05D000189 ORTHO05D000474 4.2e-07 59.7 151 31.1
FvH4_4g31540 Fragaria vesca HOM05D000189 ORTHO05D000474 5.5e-07 59.3 146 30.8
FAN12G1530 Fragaria x ananassa HOM05D000189 ORTHO05D000474 5.5e-07 59.3 146 30.8
HanXRQChr10g0297801 Helianthus annuus HOM05D000189 ORTHO05D004078 5.5e-07 59.3 132 32.6
Dinv36181 Davidia involucrata HOM05D000189 ORTHO05D000474 7.2e-07 58.9 147 31.3
HanXRQChr01g0019121 Helianthus annuus HOM05D000189 ORTHO05D007859 7.2e-07 58.9 157 33.8
MD15G1136000 Malus domestica HOM05D000189 ORTHO05D004078 7.2e-07 58.9 132 32.6
DCAR_009595 Daucus carota HOM05D000189 ORTHO05D004078 9.4e-07 58.5 131 32.1
Pp3c10_2230 Physcomitrium patens HOM05D000189 ORTHO05D004078 9.4e-07 58.5 132 32.6
arahy.Tifrunner.gnm1.ann1.XQ9TSC Arachis hypogaea HOM05D000189 ORTHO05D004078 1.2e-06 58.2 181 28.2
Lj1g0004532 Lotus japonicus HOM05D000189 ORTHO05D004078 1.2e-06 58.2 156 29.5
Zm00001eb075990 Zea mays HOM05D000189 ORTHO05D000474 1.2e-06 58.2 154 33.1
Aqoxy6G00326 Aquilegia oxysepala HOM05D000189 ORTHO05D004078 1.6e-06 57.8 132 31.8
AUR62006531 Chenopodium quinoa HOM05D000189 ORTHO05D000474 1.6e-06 57.8 150 32.7
Gorai.006G007400 Gossypium raimondii HOM05D000189 ORTHO05D004078 1.6e-06 57.8 134 32.1
CDE08G1310 Ceratophyllum demersum HOM05D000189 ORTHO05D004078 2.1e-06 57.4 132 31.1
Haze_10219 Corylus avellana HOM05D000189 ORTHO05D008437 2.1e-06 57.4 164 29.9
Glyma.06G156400 Glycine max HOM05D000189 ORTHO05D004078 2.1e-06 57.4 167 28.7
Os04g0435700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D004078 2.1e-06 57.4 134 30.6
SGA_v2.0_scaffold54G19614 Striga asiatica HOM05D000189 ORTHO05D004078 2.1e-06 57.4 132 31.1
GSVIVG01022347001 Vitis vinifera HOM05D000189 ORTHO05D004078 2.1e-06 57.4 132 31.8
arahy.Tifrunner.gnm1.ann1.F1F8UR Arachis hypogaea HOM05D000189 ORTHO05D004078 2.7e-06 57.0 181 28.2
BcaC08g47195 Brassica carinata HOM05D000189 ORTHO05D000474 2.7e-06 57.0 152 32.2
CDE02G3989 Ceratophyllum demersum HOM05D000189 ORTHO05D004078 2.7e-06 57.0 134 31.3
AUR62000180 Chenopodium quinoa HOM05D000189 ORTHO05D000474 2.7e-06 57.0 150 32.7
Duzib248G0193 Durio zibethinus HOM05D000189 ORTHO05D000474 2.7e-06 57.0 144 31.2
Migut.L00266 Erythranthe guttata HOM05D000189 ORTHO05D007859 2.7e-06 57.0 177 30.5
Lj2A617T13 Lonicera japonica HOM05D000189 ORTHO05D004078 2.7e-06 57.0 149 30.9
Lj1g0018413 Lotus japonicus HOM05D000189 ORTHO05D000474 2.7e-06 57.0 144 31.2
PGR031G3790 Punica granatum HOM05D000189 ORTHO05D000474 2.7e-06 57.0 158 31.0
Rhsim02G0037600 Rhododendron simsii HOM05D000189 ORTHO05D000474 2.7e-06 57.0 144 30.6
TWI75G0993 Tripterygium wilfordii HOM05D000189 ORTHO05D004078 2.7e-06 57.0 131 33.6
MSTRG.9888 Avicennia marina HOM05D000189 ORTHO05D000474 3.6e-06 56.6 156 29.5
Glyma.16G170500 Glycine max HOM05D000189 ORTHO05D000474 3.6e-06 56.6 154 33.1
Glyma.16G171900 Glycine max HOM05D000189 ORTHO05D000474 3.6e-06 56.6 154 33.1
Potri.005G190000 Populus trichocarpa HOM05D000189 ORTHO05D000474 3.6e-06 56.6 154 30.5
Potri.015G107000 Populus trichocarpa HOM05D000189 ORTHO05D008437 3.6e-06 56.6 188 26.1
Thecc.01G139000 Theobroma cacao HOM05D000189 ORTHO05D004078 3.6e-06 56.6 131 32.1
GSVIVG01020081001 Vitis vinifera HOM05D000189 ORTHO05D008437 3.6e-06 56.6 166 28.9
Zm00001eb267290 Zea mays HOM05D000189 ORTHO05D000474 3.6e-06 56.6 152 30.3
CSS0029875 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 4.7e-06 56.2 132 31.1
Dinv19944 Davidia involucrata HOM05D000189 ORTHO05D000474 4.7e-06 56.2 130 33.8
FAN07G2447 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.7e-06 56.2 146 30.8
Lj1g0005687 Lotus japonicus HOM05D000189 ORTHO05D007859 4.7e-06 56.2 157 32.5
PSO832G2566 Papaver somniferum HOM05D000189 ORTHO05D008437 4.7e-06 56.2 165 28.5
Zm00001eb082500 Zea mays HOM05D000189 ORTHO05D004078 4.7e-06 56.2 134 29.1
Actinidia34991 Actinidia chinensis HOM05D000189 ORTHO05D000474 6.1e-06 55.8 150 34.0
Aa31LG9G2950 Aethionema arabicum HOM05D000189 ORTHO05D000474 6.1e-06 55.8 144 29.9
Cc01_g05540 Coffea canephora HOM05D000189 ORTHO05D000474 6.1e-06 55.8 143 30.8
COL.COLO4_12068 Corchorus olitorius HOM05D000189 ORTHO05D004078 6.1e-06 55.8 132 31.1
Lalb_Chr08g0238151 Lupinus albus HOM05D000189 ORTHO05D004078 6.1e-06 55.8 149 29.5
Oeu037861.2 Olea europaea HOM05D000189 ORTHO05D004078 6.1e-06 55.8 134 29.9
Os04g0686200 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D000474 6.1e-06 55.8 156 32.1
unitig_22.g6196 Utricularia gibba HOM05D000189 ORTHO05D000474 6.1e-06 55.8 154 31.2
BraA10t44099Z Brassica rapa HOM05D000189 ORTHO05D000474 7.9e-06 55.5 152 30.3
Duzib264G1077 Durio zibethinus HOM05D000189 ORTHO05D004078 7.9e-06 55.5 130 30.8
Medtr8g094410 Medicago truncatula HOM05D000189 ORTHO05D004078 7.9e-06 55.5 184 27.7
Psat7g044560 Pisum sativum HOM05D000189 ORTHO05D004078 7.9e-06 55.5 183 26.8
Prupe.4G277200 Prunus persica HOM05D000189 ORTHO05D004078 7.9e-06 55.5 132 31.1
SEGI_16866 Sequoiadendron giganteum HOM05D000189 ORTHO05D000474 7.9e-06 55.5 159 30.8
Sc16g0009570 Simmondsia chinensis HOM05D000189 ORTHO05D004078 7.9e-06 55.5 133 29.3


User provided reference genes

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