Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.3e-231 804.3 406 100.0
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.2e-190 669.1 406 84.5
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.2e-158 562.8 406 73.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.4e-149 532.7 402 69.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.6e-148 528.5 402 69.2
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-147 526.9 405 68.4
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 4.3e-146 521.9 407 67.3
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.3e-146 521.9 409 67.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 5.6e-146 521.5 405 67.4
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.6e-145 520.0 405 67.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.1e-145 519.6 405 67.7
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.6e-145 518.8 406 66.5
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.7e-145 518.5 399 66.4
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-144 517.3 407 66.8
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.8e-144 516.5 403 67.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.1e-144 515.8 405 66.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.0e-144 515.4 409 66.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.5e-143 513.5 406 65.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.0e-143 513.1 404 66.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.4e-143 511.9 406 67.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.4e-143 511.9 409 66.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 5.8e-143 511.5 411 65.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.2e-142 509.6 406 66.3
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.8e-142 508.8 409 66.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.9e-142 508.4 410 67.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 6.4e-142 508.1 410 65.4
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.1e-141 507.3 409 66.7
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-141 507.3 409 66.7
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.9e-141 506.5 409 66.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.9e-141 506.5 405 65.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.4e-141 506.1 409 66.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.4e-141 506.1 405 66.2
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.4e-141 505.0 401 66.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.1e-141 504.6 409 65.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 9.3e-141 504.2 398 67.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 9.3e-141 504.2 405 65.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.3e-141 504.2 403 65.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.1e-140 503.1 404 66.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.7e-140 502.7 406 65.5
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.5e-140 502.3 403 66.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 4.6e-140 501.9 408 65.2
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.8e-140 501.1 408 64.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.0e-139 500.7 337 78.6
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-139 500.0 423 63.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.6e-139 498.0 406 64.8
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 6.6e-139 498.0 411 64.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.3e-138 495.7 410 63.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.6e-137 493.4 417 63.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.6e-137 493.4 403 64.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.1e-137 493.0 381 66.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 6.2e-137 491.5 422 64.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 8.1e-137 491.1 402 64.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.1e-136 489.2 411 63.5
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 5.3e-136 488.4 404 64.1
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 9.0e-136 487.6 403 63.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-135 487.3 404 64.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.5e-135 486.9 380 67.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-135 486.9 412 62.6
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.0e-135 486.5 405 63.5
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 7.6e-135 484.6 408 62.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.3e-134 483.8 405 63.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.4e-134 481.5 409 62.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.6e-132 476.9 411 62.0
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.6e-132 476.9 383 65.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.1e-132 476.5 419 61.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 7.9e-132 474.6 399 62.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 7.9e-132 474.6 383 65.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 8.7e-131 471.1 407 61.4
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.1e-130 470.7 351 69.5
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-130 470.3 399 63.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.3e-129 467.2 407 60.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.1e-129 466.5 380 64.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-129 466.1 400 62.8
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.2e-129 464.9 404 61.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.1e-129 464.5 397 62.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.2e-127 460.7 406 61.3
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.0e-127 459.9 408 59.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.4e-127 459.1 389 62.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.9e-127 457.6 389 63.0
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.4e-125 453.8 395 60.8
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.4e-125 453.8 433 57.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.4e-125 453.0 412 59.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 9.3e-125 451.1 268 82.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.1e-124 449.9 381 63.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 4.6e-124 448.7 427 57.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.0e-123 447.6 388 58.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.0e-123 446.0 399 58.4
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.1e-123 445.3 427 58.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 6.7e-123 444.9 382 61.5
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.5e-122 443.7 386 60.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.3e-122 442.6 383 60.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.3e-122 442.6 395 59.0
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.6e-121 440.3 387 59.4
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.8e-121 439.5 400 58.2
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.8e-121 438.7 398 60.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.1e-120 436.0 381 59.8
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.0e-120 435.6 394 59.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 5.3e-120 435.3 387 61.8
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.9e-120 434.9 381 59.6
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 9.0e-120 434.5 387 59.2
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.4e-119 432.6 390 59.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 5.8e-119 431.8 381 60.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 7.6e-119 431.4 376 59.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 7.6e-119 431.4 376 61.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.0e-118 431.0 380 59.7
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-118 430.6 379 59.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.7e-118 430.3 378 60.1
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-118 430.3 382 59.2
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.7e-118 430.3 380 59.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 3.8e-118 429.1 406 58.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.9e-118 428.7 379 59.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.1e-117 427.6 380 59.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.9e-117 426.8 405 57.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.2e-117 426.0 380 59.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.5e-117 425.2 380 59.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.5e-117 425.2 381 59.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 7.1e-117 424.9 384 58.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-116 424.1 402 57.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 7.9e-116 421.4 386 58.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.8e-115 420.2 390 57.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.9e-115 419.1 413 54.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 5.1e-115 418.7 265 79.2
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.1e-114 417.5 385 57.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 9.7e-114 414.5 433 52.7
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-112 411.0 366 60.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 7.7e-111 404.8 327 66.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-110 402.5 386 57.3
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.1e-109 401.0 368 58.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.2e-109 399.4 385 56.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 6.9e-104 381.7 584 40.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.9e-99 365.9 406 49.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.3e-97 360.9 226 77.4
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-94 349.7 384 52.3
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.6e-90 336.7 386 48.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-89 332.4 279 62.0
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 6.7e-83 312.0 292 55.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.0e-82 310.5 267 61.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.7e-81 307.4 202 74.3
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.1e-80 302.8 279 59.5
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-78 297.4 298 53.7
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.2e-78 297.0 245 64.9
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.4e-74 282.7 163 85.3
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.7e-70 270.8 282 54.6
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.4e-64 250.4 243 58.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.0e-59 233.0 406 37.9
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.5e-58 231.1 161 68.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.4e-57 225.7 214 55.1
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.4e-56 223.8 164 67.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.7e-52 209.5 241 49.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.4e-51 208.0 239 50.6
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 5.1e-46 189.5 310 41.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 5.6e-45 186.0 197 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.1e-43 181.8 331 37.5
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.3e-37 159.8 198 48.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 4.3e-37 159.8 115 69.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.4e-27 127.5 295 33.9
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.5e-26 124.8 71 87.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.9e-25 120.6 420 30.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.2e-24 117.1 284 32.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.5e-23 113.6 206 36.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 6.9e-19 99.4 66 69.7
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.6e-18 97.4 193 35.8
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.4e-18 97.1 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.4e-16 91.7 56 78.6
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.2e-16 90.5 60 70.0
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 7.1e-08 62.8 72 47.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 6.0e-07 59.7 142 31.7


User provided reference genes

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