Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 3.6e-312 1074.3 529 100.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.6e-308 1061.2 529 98.9
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.8e-306 1055.0 529 97.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 5.5e-303 1043.5 529 95.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 9.4e-303 1042.7 529 96.6
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.5e-279 965.7 527 90.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.5e-279 964.9 529 90.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 9.5e-279 963.0 533 88.7
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.8e-278 961.4 528 89.8
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 5.2e-277 957.2 529 89.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.2e-277 957.2 527 89.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 8.9e-277 956.4 533 88.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.9e-277 956.4 527 89.2
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.0e-276 955.3 528 89.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.0e-276 955.3 527 89.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 4.4e-276 954.1 532 87.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.8e-276 953.7 527 89.2
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 9.8e-276 953.0 529 88.5
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.3e-275 952.6 527 89.4
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.2e-275 951.8 528 88.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.4e-274 948.3 528 88.3
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.2e-274 948.0 528 88.1
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.1e-274 947.6 530 87.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.1e-274 947.6 530 87.7
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.4e-274 947.2 528 87.9
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 9.2e-274 946.4 568 84.0
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 3.5e-273 944.5 533 87.4
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 7.8e-273 943.3 528 87.7
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.3e-272 941.8 533 87.2
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 3.0e-272 941.4 529 87.3
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 6.6e-272 940.3 506 90.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.3e-271 937.6 528 87.1
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.3e-271 937.6 528 87.5
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 5.6e-271 937.2 503 90.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 9.5e-271 936.4 524 87.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.6e-270 935.6 529 86.6
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.1e-270 935.3 528 86.7
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.7e-270 934.1 529 86.6
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.1e-269 931.4 529 87.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.0e-269 931.0 519 87.7
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 6.8e-269 930.2 519 87.7
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.5e-268 929.1 528 86.2
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.6e-268 928.3 526 86.1
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.4e-268 927.9 527 86.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.8e-268 926.4 529 86.6
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.7e-267 925.6 503 89.5
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.7e-267 925.6 528 85.6
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.2e-267 925.2 534 85.4
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.2e-267 925.2 527 86.0
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.9e-267 924.9 527 84.8
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 8.3e-267 923.3 528 84.7
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.9e-266 922.2 524 85.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.2e-266 921.4 527 85.0
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 5.4e-266 920.6 527 85.4
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 5.4e-266 920.6 528 85.8
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 5.4e-266 920.6 528 85.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.1e-266 920.2 528 85.2
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.2e-265 919.5 527 86.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 2.1e-265 918.7 531 86.6
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.0e-265 917.1 529 85.8
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.0e-264 916.4 529 85.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.0e-264 916.4 510 86.1
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 5.1e-264 914.1 499 88.6
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 6.6e-264 913.7 527 84.3
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 6.6e-264 913.7 526 85.7
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-263 912.9 527 84.4
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.1e-263 912.9 527 84.4
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.5e-263 912.5 501 87.4
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.5e-263 911.8 528 85.4
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 7.3e-263 910.2 527 84.3
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 9.5e-263 909.8 527 84.3
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 9.5e-263 909.8 527 84.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 9.5e-263 909.8 516 85.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 9.5e-263 909.8 562 81.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.6e-262 909.1 503 87.7
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.7e-262 907.5 527 83.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.1e-262 906.7 551 81.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 8.1e-262 906.7 519 85.0
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.1e-261 906.4 502 86.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.4e-261 906.0 532 83.3
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.4e-261 906.0 501 86.8
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-261 905.6 537 83.6
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.8e-261 905.6 501 86.8
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.8e-261 905.6 501 86.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.0e-261 904.4 527 84.3
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.8e-261 903.7 503 87.3
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-260 902.9 528 83.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.2e-260 902.9 500 87.8
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.5e-260 902.5 529 83.2
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 4.4e-260 901.0 528 83.0
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.7e-259 899.0 528 82.0
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.1e-258 896.3 531 82.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 3.2e-258 894.8 529 82.4
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-255 886.3 529 82.4
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 9.6e-255 883.2 510 84.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.8e-254 881.7 529 81.7
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.4e-253 879.4 505 84.0
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.9e-253 877.1 521 82.0
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.5e-252 875.9 513 81.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.0e-252 875.5 511 82.8
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.2e-251 872.1 523 79.3
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 7.8e-249 863.6 507 83.4
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 7.8e-249 863.6 507 83.4
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 5.6e-247 857.4 529 77.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 4.0e-245 851.3 525 77.3
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.6e-241 839.3 519 79.6
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 8.7e-240 833.6 529 76.0
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.1e-239 833.2 501 81.4
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 4.8e-238 827.8 568 73.9
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.1e-230 802.4 522 74.5
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 4.9e-227 791.2 521 73.9
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.5e-227 790.8 500 75.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.6e-225 784.6 507 72.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.9e-224 781.6 474 82.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.1e-221 773.5 526 70.3
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 9.0e-221 770.4 525 70.7
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.9e-219 765.4 527 69.8
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.2e-218 761.5 525 69.0
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 4.3e-215 751.5 527 73.4
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 5.3e-213 744.6 503 71.8
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.9e-213 744.2 528 72.9
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.8e-208 729.6 413 86.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-208 729.6 528 72.3
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.3e-203 713.4 492 68.5
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.5e-203 711.1 527 71.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 6.1e-193 677.9 380 88.2
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.9e-186 656.4 502 63.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.1e-185 652.9 515 61.0
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 8.8e-184 647.5 420 80.0
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.7e-179 633.3 347 91.4
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 6.8e-176 621.3 345 88.4
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 5.4e-157 558.5 519 57.4
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-152 544.3 356 77.2
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 9.9e-151 537.7 492 53.0
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.2e-148 530.8 298 86.2
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.0e-143 513.5 296 82.4
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.2e-141 506.1 275 91.3
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.1e-136 491.1 357 72.5
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.1e-133 481.1 511 49.3
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 9.0e-128 461.5 503 48.7
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.4e-120 436.8 286 78.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.2e-94 350.5 200 82.0
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 3.3e-82 310.1 410 40.0
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.0e-62 245.4 329 45.3
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.3e-62 244.2 365 43.0
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.0e-46 190.7 121 74.4
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 4.9e-41 173.3 93 87.1
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.9e-29 134.8 95 68.4
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.6e-28 131.7 79 78.5
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 7.8e-23 112.8 68 76.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.1e-20 104.8 82 62.2
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 3.3e-13 80.9 72 59.7
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 7.3e-13 79.7 125 42.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 8.1e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

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