Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 4.6e-91 337.8 164 100.0
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.9e-85 318.5 165 93.9
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 4.2e-84 314.7 165 93.3
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 1.1e-81 306.6 162 90.1
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 1.5e-81 306.2 164 87.2
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 2.9e-69 265.4 164 78.7
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 8.5e-69 263.8 164 78.7
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.9e-68 262.7 166 77.1
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.9e-68 262.7 164 78.7
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.8e-66 256.1 164 77.4
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.8e-66 256.1 165 77.0
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 3.0e-66 255.4 164 76.2
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.2e-66 254.6 164 76.2
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-65 253.4 166 77.1
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 2.0e-65 252.7 164 76.2
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 2.0e-65 252.7 164 74.4
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 3.3e-65 251.9 160 76.2
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 9.7e-65 250.4 164 75.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 9.7e-65 250.4 164 73.8
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.3e-64 250.0 164 75.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.7e-64 249.6 158 77.8
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.2e-64 249.2 164 74.4
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.8e-64 248.8 184 69.0
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.8e-64 248.8 165 74.5
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 3.7e-64 248.4 164 72.6
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.8e-64 248.1 162 74.1
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 4.8e-64 248.1 164 73.8
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.8e-64 248.1 164 75.0
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 6.3e-64 247.7 162 73.5
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 8.2e-64 247.3 164 75.6
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 8.2e-64 247.3 164 72.6
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.1e-63 246.9 164 73.8
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.4e-63 246.5 162 72.8
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.8e-63 246.1 164 75.0
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.4e-63 245.7 164 73.8
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.4e-63 245.7 164 73.8
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.1e-63 245.0 164 74.4
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.3e-63 244.6 164 74.4
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 7.0e-63 244.2 164 71.3
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.2e-62 243.4 156 75.6
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.2e-62 243.4 156 75.6
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.0e-62 242.7 158 75.3
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 2.7e-62 242.3 168 70.2
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.7e-62 242.3 164 73.2
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 3.5e-62 241.9 164 71.3
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 4.5e-62 241.5 165 73.9
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 4.5e-62 241.5 164 70.7
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.2e-61 239.2 159 69.8
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.8e-61 238.4 164 69.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 3.8e-61 238.4 165 67.9
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 5.0e-61 238.0 165 69.7
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 5.0e-61 238.0 164 71.3
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.0e-61 238.0 164 72.0
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 6.5e-61 237.7 165 72.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 6.5e-61 237.7 167 70.1
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.1e-60 236.9 158 73.4
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.1e-60 236.9 164 71.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.2e-60 235.3 164 70.7
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 3.2e-60 235.3 157 70.7
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 4.2e-60 235.0 156 71.8
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 5.5e-60 234.6 158 73.4
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 7.2e-60 234.2 155 74.8
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 7.2e-60 234.2 165 69.1
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.2e-59 233.4 164 65.9
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.6e-59 233.0 157 69.4
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 8.0e-59 230.7 164 68.3
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.0e-58 230.3 164 70.1
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.8e-58 229.6 164 70.1
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.3e-58 229.2 165 69.7
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.0e-57 226.1 160 68.1
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.6e-57 225.7 160 68.1
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 4.4e-57 224.9 157 68.8
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 5.7e-57 224.6 164 68.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.3e-56 223.4 165 64.8
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.3e-56 223.4 165 64.8
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.3e-56 223.4 166 63.9
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.3e-56 223.4 160 68.8
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 2.8e-56 222.2 158 67.7
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.8e-56 222.2 164 65.2
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 6.3e-56 221.1 164 66.5
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.1e-55 220.3 158 67.7
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.1e-55 220.3 165 65.5
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.4e-55 219.2 154 72.1
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 3.1e-55 218.8 158 67.1
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 4.1e-55 218.4 158 67.1
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 7.0e-55 217.6 166 65.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 9.1e-55 217.2 157 65.6
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.2e-54 216.9 158 65.8
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.5e-54 215.3 146 70.5
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.3e-53 213.4 158 65.8
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.9e-53 212.2 160 65.0
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 2.9e-53 212.2 160 65.0
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 3.8e-53 211.8 156 63.5
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 5.0e-53 211.5 160 65.0
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 8.6e-53 210.7 160 63.8
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-52 210.3 160 63.8
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 1.9e-52 209.5 160 64.4
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 2.5e-52 209.1 156 65.4
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 2.5e-52 209.1 154 66.9
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 3.3e-52 208.8 160 63.1
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 3.3e-52 208.8 157 64.3
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 4.2e-52 208.4 158 64.6
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 4.2e-52 208.4 154 65.6
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 5.5e-52 208.0 160 62.5
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 9.5e-52 207.2 160 60.6
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 9.5e-52 207.2 236 48.3
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.1e-51 206.1 162 63.0
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 2.8e-51 205.7 160 63.1
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 2.8e-51 205.7 160 63.1
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 2.8e-51 205.7 161 62.7
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 3.6e-51 205.3 158 64.6
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 6.1e-51 204.5 161 62.1
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 8.0e-51 204.1 189 56.6
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.8e-50 203.0 165 65.5
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 3.0e-50 202.2 147 68.7
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 6.8e-50 201.1 151 66.2
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 6.8e-50 201.1 156 61.5
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 8.9e-50 200.7 158 62.0
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 5.7e-49 198.0 159 61.0
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 7.5e-49 197.6 141 70.2
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.0e-45 187.2 138 68.1
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.5e-44 182.6 157 60.5
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.1e-43 179.5 106 77.4
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 2.3e-42 176.0 139 62.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.2e-42 174.9 149 57.0
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 8.9e-42 174.1 149 59.1
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.0e-41 172.9 162 58.6
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.6e-41 172.6 162 55.6
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.9e-40 169.1 162 58.0
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 4.9e-40 168.3 160 53.1
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 8.3e-40 167.5 246 42.7
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 2.4e-39 166.0 162 52.5
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 1.6e-38 163.3 89 74.2
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 1.9e-36 156.4 163 44.8
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 3.3e-36 155.6 157 51.0
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 6.8e-34 147.9 144 51.4
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 6.8e-34 147.9 162 51.9
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.5e-33 146.7 164 47.6
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.9e-32 142.5 159 44.0
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 4.9e-32 141.7 157 44.6
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 9.2e-31 137.5 155 38.7
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 8.6e-29 131.0 142 50.7
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.2e-27 127.1 164 39.0
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 6.2e-27 124.8 65 78.5
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.4e-26 123.6 89 61.8
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.7e-24 116.7 88 59.1
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 6.4e-24 114.8 156 36.5
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 2.5e-20 102.8 156 41.0
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 2.5e-20 102.8 156 41.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 3.3e-20 102.4 156 41.0
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 4.3e-20 102.1 107 52.3
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 5.6e-20 101.7 165 40.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 6.2e-19 98.2 165 39.4
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 1.4e-18 97.1 94 55.3
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.6e-14 83.6 158 38.6
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 8.1e-11 71.2 39 79.5
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 5.8e-09 65.1 97 33.0
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 1.3e-08 63.9 93 33.3
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 1.7e-08 63.5 92 33.7
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 2.9e-08 62.8 97 32.0
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 2.9e-08 62.8 97 32.0
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 3.8e-08 62.4 92 34.8
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 1.1e-07 60.8 96 32.3
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 1.4e-07 60.5 85 34.1
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 1.4e-07 60.5 93 31.2
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 1.4e-07 60.5 49 65.3
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 1.9e-07 60.1 93 31.2
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 3.2e-07 59.3 93 31.2
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 7.1e-07 58.2 92 31.5
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 4.6e-06 55.5 91 33.0
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 7.8e-06 54.7 96 32.3


User provided reference genes

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