Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 6.6e-68 260.8 151 100.0
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 7.3e-67 257.3 151 98.0
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.2e-64 250.0 150 95.3
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 4.5e-56 221.5 157 85.4
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 7.1e-54 214.2 148 84.5
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.1e-53 212.6 144 86.1
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.7e-53 212.2 124 90.3
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 7.9e-53 210.7 123 89.4
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.8e-52 209.5 144 84.7
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 3.0e-52 208.8 158 74.1
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 3.0e-52 208.8 148 82.4
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 6.7e-52 207.6 123 87.0
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.7e-52 207.2 122 89.3
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.5e-51 206.5 125 87.2
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-51 206.1 122 89.3
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.5e-51 205.7 122 88.5
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.5e-51 205.7 144 84.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.5e-51 205.7 147 81.6
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 3.3e-51 205.3 123 87.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.3e-50 203.4 123 87.0
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.3e-50 203.4 123 87.0
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.3e-50 203.4 148 80.4
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.1e-50 202.6 123 86.2
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.1e-50 202.6 123 86.2
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.1e-50 202.6 123 86.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.1e-50 202.6 123 85.4
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.1e-50 202.6 147 81.0
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.7e-50 201.8 124 86.3
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 3.7e-50 201.8 123 86.2
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 8.1e-50 200.7 147 80.3
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 8.1e-50 200.7 123 85.4
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.1e-49 200.3 125 85.6
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.1e-49 200.3 153 78.4
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.1e-49 200.3 124 86.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.1e-49 200.3 127 85.0
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.4e-49 199.9 123 86.2
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.4e-49 199.9 123 86.2
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.8e-49 199.5 147 81.0
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.4e-49 199.1 120 87.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 2.4e-49 199.1 124 85.5
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 3.1e-49 198.7 150 77.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 3.1e-49 198.7 124 83.9
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 4.0e-49 198.4 123 84.6
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 4.0e-49 198.4 124 83.1
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 9.0e-49 197.2 150 76.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.2e-48 196.8 153 78.4
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.2e-48 196.8 155 76.1
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.0e-47 193.7 123 82.1
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.0e-47 193.7 122 83.6
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.3e-47 193.4 123 81.3
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.3e-47 193.4 125 81.6
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.3e-47 193.4 150 74.7
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.3e-47 193.4 150 72.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.3e-47 193.4 122 81.1
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.3e-47 193.4 122 83.6
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.2e-47 192.6 122 82.8
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.9e-47 192.2 150 73.3
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.5e-47 191.0 122 82.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 8.4e-47 190.7 124 80.6
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.1e-46 190.3 120 79.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.9e-46 189.5 120 81.7
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.2e-46 188.7 120 79.2
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 3.2e-46 188.7 151 75.5
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.2e-46 188.3 120 81.7
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.5e-46 188.0 120 78.3
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 5.5e-46 188.0 128 77.3
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.5e-46 188.0 146 76.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.5e-46 188.0 146 76.0
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 7.1e-46 187.6 120 79.2
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 7.1e-46 187.6 146 76.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 9.3e-46 187.2 118 80.5
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.2e-45 186.8 121 78.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.6e-45 186.4 120 77.5
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.1e-45 186.0 138 71.7
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.7e-45 185.7 150 73.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.7e-45 185.7 159 71.7
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.7e-45 185.7 122 81.1
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 3.5e-45 185.3 120 76.7
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 3.5e-45 185.3 122 76.2
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 4.6e-45 184.9 120 76.7
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 4.6e-45 184.9 120 76.7
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 4.6e-45 184.9 120 76.7
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 6.0e-45 184.5 120 77.5
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 6.0e-45 184.5 120 77.5
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 6.0e-45 184.5 146 74.7
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 7.9e-45 184.1 122 74.6
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 7.9e-45 184.1 159 67.3
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.8e-44 183.0 120 75.0
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.8e-44 183.0 125 76.8
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 1.8e-44 183.0 125 76.0
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 2.3e-44 182.6 126 77.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.7e-44 181.0 122 80.3
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 8.7e-44 180.6 124 74.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.1e-43 180.3 123 78.9
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.5e-43 179.1 129 72.9
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.3e-43 178.7 127 74.0
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.3e-43 178.3 127 74.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 7.4e-43 177.6 126 73.8
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.6e-43 177.2 127 73.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.3e-42 176.8 125 76.0
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.3e-42 176.8 127 74.0
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-42 176.8 127 74.0
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.6e-42 176.4 122 79.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 4.8e-42 174.9 116 79.3
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 6.3e-42 174.5 159 57.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.1e-41 172.2 120 73.3
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 6.9e-41 171.0 202 52.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.5e-40 169.9 124 74.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 4.5e-40 168.3 122 76.2
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.0e-39 167.2 117 72.6
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.0e-39 164.9 193 53.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.1e-38 163.7 123 76.4
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.9e-38 162.9 142 63.4
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 6.1e-37 157.9 121 64.5
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 6.1e-37 157.9 100 83.0
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.0e-36 157.1 124 66.1
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.8e-36 156.4 99 81.8
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.8e-36 156.4 94 85.1
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 5.1e-36 154.8 98 82.7
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 6.7e-36 154.5 102 79.4
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.3e-35 152.1 143 55.2
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 7.4e-35 151.0 128 63.3
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.4e-33 146.0 121 62.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.9e-33 144.4 120 61.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 6.9e-33 144.4 91 83.5
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.0e-32 142.9 119 60.5
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.0e-31 140.6 144 54.9
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.2e-30 135.2 122 57.4
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.1e-29 132.9 83 81.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 6.1e-29 131.3 121 54.5
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.2e-24 117.1 108 62.0
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.7e-21 105.1 96 64.6
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 4.7e-21 105.1 79 68.4
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 5.2e-20 101.7 91 58.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 5.2e-20 101.7 91 58.2
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-18 97.1 65 75.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 8.8e-12 74.3 70 64.3
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-11 73.9 83 57.8
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-11 73.9 83 57.8
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 2.6e-11 72.8 62 54.8
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 5.3e-09 65.1 47 68.1


User provided reference genes

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