Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.2e-233 812.8 405 100.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.9e-178 629.4 381 82.4
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.2e-177 626.7 381 82.4
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 3.2e-141 505.8 440 62.0
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 4.9e-126 455.3 334 65.6
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 7.1e-125 451.4 335 64.5
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.3e-123 447.2 337 63.8
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.8e-123 446.8 351 62.1
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 6.7e-123 444.9 336 63.7
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 6.7e-123 444.9 343 63.3
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.3e-122 442.2 345 62.3
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.6e-122 441.8 378 58.2
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 7.4e-122 441.4 333 64.0
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 6.2e-121 438.3 357 61.6
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.8e-120 436.8 367 62.1
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.5e-119 433.7 361 60.4
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 2.2e-118 429.9 332 63.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 4.9e-118 428.7 350 61.1
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.9e-117 426.8 337 61.7
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.9e-117 426.8 374 59.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 4.2e-117 425.6 339 61.9
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.2e-117 425.6 349 61.0
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 7.1e-117 424.9 351 58.1
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 9.3e-117 424.5 342 62.6
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.1e-116 423.3 330 61.5
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.7e-116 422.9 340 60.9
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 2.7e-116 422.9 349 59.3
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 3.5e-116 422.5 335 63.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 4.6e-116 422.2 333 62.2
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 6.0e-116 421.8 343 60.9
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 7.9e-116 421.4 343 60.6
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.3e-115 420.6 350 58.0
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.8e-115 420.2 349 60.5
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.8e-115 420.2 339 60.8
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.3e-115 419.9 342 62.0
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.9e-115 419.1 367 57.8
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 5.1e-115 418.7 334 59.3
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.1e-115 418.7 391 57.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.1e-115 418.7 326 63.2
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 2.5e-114 416.4 331 62.2
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.3e-114 416.0 323 62.5
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.6e-114 415.2 362 57.5
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 9.6e-114 414.5 357 58.8
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.1e-113 413.3 337 60.2
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.8e-113 412.1 323 62.2
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 4.8e-113 412.1 337 59.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 6.2e-113 411.8 336 60.4
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 5.3e-112 408.7 335 58.5
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.2e-111 407.5 374 55.3
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.0e-110 404.4 331 59.2
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 4.9e-110 402.1 326 60.1
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 8.4e-110 401.4 358 57.3
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.1e-109 401.0 326 60.1
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.4e-109 400.6 333 59.5
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.9e-109 400.2 326 59.8
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.9e-109 400.2 333 57.4
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 2.5e-109 399.8 339 59.3
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 9.3e-109 397.9 326 59.5
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.2e-108 397.5 332 56.9
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 2.1e-108 396.7 414 52.9
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 2.1e-108 396.7 324 60.8
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 3.5e-108 396.0 326 59.2
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 4.6e-108 395.6 334 57.2
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.3e-107 394.0 331 56.8
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.3e-107 393.3 333 58.6
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.9e-107 392.5 331 56.8
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 6.7e-107 391.7 338 58.9
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 3.7e-105 386.0 337 57.3
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.1e-104 384.4 335 57.0
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.4e-104 384.0 366 54.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.4e-104 383.3 326 58.6
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.5e-103 380.6 339 56.3
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 2.6e-103 379.8 327 56.6
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 2.9e-102 376.3 340 55.6
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 3.8e-102 375.9 329 57.1
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 6.5e-102 375.2 334 53.0
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.4e-101 374.0 349 55.3
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 3.2e-101 372.9 325 58.5
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 4.2e-101 372.5 349 54.2
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 5.5e-101 372.1 348 54.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 9.4e-101 371.3 333 56.8
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 2.1e-100 370.2 348 54.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 2.1e-100 370.2 325 58.5
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.7e-100 369.8 333 56.8
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.6e-100 369.4 324 55.9
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 7.9e-100 368.2 292 60.6
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 6.7e-99 365.2 345 51.3
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 7.4e-98 361.7 309 58.3
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.7e-97 360.5 325 56.0
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.7e-97 360.5 331 55.6
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.8e-97 359.8 325 58.2
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 3.7e-97 359.4 328 55.5
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-96 357.8 337 51.3
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.1e-96 356.3 324 56.2
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.8e-94 349.4 350 52.6
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 8.5e-94 348.2 322 54.3
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 8.5e-94 348.2 322 54.3
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 8.5e-94 348.2 302 59.9
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 4.2e-93 345.9 312 57.4
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 9.4e-93 344.7 307 54.4
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.9e-91 339.3 332 53.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 5.1e-91 339.0 325 53.2
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.5e-90 337.4 307 56.4
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.5e-90 337.4 277 58.5
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 4.4e-90 335.9 326 54.3
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.3e-89 334.3 348 51.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.6e-87 326.6 301 52.8
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.6e-87 326.6 327 51.4
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 5.0e-86 322.4 205 70.2
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 4.7e-84 315.8 330 50.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 8.8e-83 311.6 284 52.5
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 2.6e-82 310.1 275 53.5
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 3.3e-82 309.7 367 46.6
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 4.8e-81 305.8 323 48.0
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.6e-79 300.1 277 54.9
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.0e-78 298.1 191 71.2
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.0e-78 298.1 367 47.7
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 1.4e-75 287.7 184 71.7
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 2.3e-75 287.0 176 74.4
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 2.0e-71 273.9 271 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 9.4e-69 265.0 325 44.6
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.8e-67 260.8 302 43.4
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 2.5e-61 240.4 326 39.9
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 3.6e-60 236.5 405 37.5
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 4.4e-58 229.6 292 44.5
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.9e-54 216.9 210 51.4
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.3e-53 213.0 219 50.2
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.2e-52 211.5 315 37.1
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 4.7e-52 209.5 211 48.8
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 8.3e-49 198.7 159 58.5
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 3.4e-42 176.8 214 44.4
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.9e-40 171.0 155 55.5
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 7.0e-40 169.1 230 38.7
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.8e-39 165.6 207 45.9
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 7.8e-39 165.6 211 42.2
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.9e-37 161.0 196 45.9
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 4.3e-37 159.8 198 46.0
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.6e-36 156.8 116 65.5
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 7.1e-32 142.5 237 32.5
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 3.4e-26 123.6 66 83.3
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.2e-24 117.1 166 39.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 9.2e-24 115.5 120 46.7
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 4.6e-23 113.2 312 29.2
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 9.6e-21 105.5 89 57.3
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 9.6e-21 105.5 89 57.3
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 4.9e-17 93.2 145 37.9
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.1e-16 92.0 286 27.3
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 1.4e-16 91.7 50 84.0
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.9e-16 91.3 49 85.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 3.2e-16 90.5 122 40.2
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.7e-14 84.7 68 60.3
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.1e-11 73.9 93 45.2
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.4e-08 65.1 46 58.7


User provided reference genes

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