Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.6e-38 161.0 76 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 9.5e-31 136.3 94 73.4
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.6e-30 135.6 94 72.3
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.6e-30 135.6 94 72.3
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.6e-30 135.6 94 74.5
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-30 135.2 94 73.4
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-30 135.2 94 73.4
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-30 135.2 94 73.4
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-30 135.2 94 72.3
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 3.6e-30 134.4 94 72.3
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 8.0e-30 133.3 94 72.3
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 8.0e-30 133.3 94 72.3
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.1e-29 132.9 93 72.0
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.4e-29 132.5 94 71.3
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.4e-29 132.5 94 71.3
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 2.3e-29 131.7 94 73.4
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 2.3e-29 131.7 94 73.4
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.1e-29 131.3 94 71.3
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 70.2
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 70.2
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 70.2
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 70.2
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 70.2
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 70.2
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 71.3
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 71.3
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 71.3
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 5.2e-29 130.6 94 71.3
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.9e-29 129.8 94 70.2
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.0e-28 128.6 94 69.1
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.6e-28 128.3 94 70.2
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 3.4e-28 127.9 94 70.2
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.4e-28 127.9 94 71.3
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.8e-28 127.1 94 69.1
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-28 126.3 94 69.1
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.3e-27 125.9 94 71.3
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-27 125.9 94 72.3
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.7e-27 125.6 94 71.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.9e-27 124.8 62 93.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.4e-26 122.5 92 66.3
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.4e-26 121.7 94 70.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.4e-26 121.7 94 67.0
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-26 120.9 94 67.0
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-26 120.9 94 67.0
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-26 120.9 94 67.0
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-26 120.9 94 67.0
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-26 120.9 94 67.0
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.0e-26 120.2 71 78.9
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 7.0e-26 120.2 71 78.9
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.2e-25 119.4 94 68.1
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.6e-25 119.0 58 94.8
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.6e-25 119.0 58 94.8
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.6e-25 119.0 58 94.8
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.0e-25 118.6 94 67.0
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 4.6e-25 117.5 94 64.9
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 7.8e-25 116.7 69 76.8
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-24 115.9 94 64.9
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.3e-24 115.9 62 88.7
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.3e-24 115.9 62 88.7
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.6e-24 113.6 74 75.7
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.1e-23 112.8 82 68.3
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.9e-23 112.1 71 76.1
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 2.5e-23 111.7 94 64.9
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.2e-22 109.4 94 62.8
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 2.1e-22 108.6 81 67.9
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 2.8e-22 108.2 81 70.4
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.8e-22 108.2 81 67.9
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.6e-22 107.8 82 63.4
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.6e-22 107.8 61 83.6
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.7e-22 107.5 94 61.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 8.1e-22 106.7 62 83.9
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.1e-21 106.3 83 65.1
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.1e-21 104.8 71 69.0
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.2e-21 104.0 58 82.8
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 6.8e-21 103.6 82 64.6
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 8.9e-21 103.2 94 58.5
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 8.9e-21 103.2 94 60.6
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.2e-20 102.8 52 90.4
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.0e-20 102.1 83 62.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.4e-20 101.3 81 64.2
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 9.2e-18 93.2 62 72.6
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 2.1e-17 92.0 79 60.8
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 4.6e-17 90.9 44 93.2
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 6.0e-17 90.5 79 60.8
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 7.8e-17 90.1 44 93.2
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 5.1e-16 87.4 74 60.8
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.1e-16 87.4 61 72.1
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.9e-15 85.5 45 84.4
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-15 84.7 72 61.1
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.3e-15 84.3 43 88.4
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 2.1e-14 82.0 66 65.2
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 3.6e-14 81.3 52 75.0
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.1e-14 80.1 74 55.4
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.6e-12 75.1 66 60.6
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.4e-12 74.3 37 89.2
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.8e-12 73.9 63 61.9
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.4e-10 68.6 37 86.5
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 7.1e-10 67.0 62 56.5
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.6e-09 65.9 32 90.6
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-09 65.5 59 62.7
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 3.5e-09 64.7 35 85.7
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 6.0e-09 63.9 63 57.1
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.3e-08 62.0 30 90.0
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 6.6e-08 60.5 55 58.2
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 6.2e-06 53.9 41 65.9


User provided reference genes

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