Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 7.0e-213 743.8 410 100.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 9.2e-189 663.7 402 91.0
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.8e-182 641.7 402 91.0
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.9e-178 629.4 399 90.0
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 5.4e-173 611.3 402 84.3
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.5e-146 522.7 413 72.9
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 4.3e-138 495.4 416 68.0
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 4.3e-138 495.4 405 72.3
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.2e-137 493.0 415 70.6
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.8e-136 490.0 405 70.4
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 5.3e-136 488.4 404 72.3
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.0e-135 486.5 422 69.0
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 4.5e-135 485.3 410 70.5
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.0e-134 484.2 410 69.3
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.0e-134 484.2 402 71.4
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.3e-134 483.8 402 71.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.2e-134 483.0 401 71.8
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.4e-133 480.3 406 69.0
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.5e-133 479.6 406 69.2
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 5.5e-133 478.4 404 72.0
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-132 477.2 401 69.1
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.1e-132 474.9 419 67.1
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 8.8e-131 471.1 397 69.3
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 8.8e-131 471.1 402 67.9
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 2.0e-130 469.9 403 67.0
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.3e-130 469.2 401 70.8
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 4.4e-130 468.8 397 69.0
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 5.7e-130 468.4 397 69.0
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 5.7e-130 468.4 403 67.7
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.2e-129 466.5 397 68.5
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 6.3e-129 464.9 405 66.7
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-128 464.2 405 66.7
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.4e-128 463.8 398 69.1
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-128 463.8 398 69.1
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.8e-128 463.4 401 68.6
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.8e-128 463.4 404 67.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.6e-127 459.5 397 69.0
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 3.5e-127 459.1 403 66.5
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 5.9e-127 458.4 405 66.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-126 457.2 404 68.3
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.8e-126 455.7 402 68.9
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.0e-126 455.3 397 68.5
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.9e-125 453.4 369 70.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 4.2e-125 452.2 397 67.0
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 7.2e-125 451.4 400 68.2
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 7.2e-125 451.4 399 67.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 9.4e-125 451.1 405 67.7
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.2e-124 450.7 400 68.5
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.2e-124 450.7 403 66.0
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 3.6e-124 449.1 395 67.6
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 3.6e-124 449.1 401 66.3
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.7e-124 448.7 400 68.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 4.7e-124 448.7 426 64.1
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.0e-124 448.0 403 67.2
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.4e-123 447.2 398 64.6
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.4e-123 447.2 345 71.0
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-123 447.2 403 67.0
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 2.3e-123 446.4 402 66.2
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.3e-123 446.4 397 67.8
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.9e-123 445.7 400 67.8
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 8.8e-123 444.5 402 65.2
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.5e-122 443.7 404 67.1
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.5e-122 443.7 408 66.2
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.6e-122 443.0 410 66.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.3e-122 442.6 401 67.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.4e-122 441.4 403 67.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 9.7e-122 441.0 401 67.3
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.8e-121 438.7 399 65.9
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 6.3e-121 438.3 401 63.6
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 8.2e-121 438.0 401 64.6
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.4e-120 437.2 345 69.9
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 7.0e-120 434.9 345 69.6
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.0e-120 434.9 398 66.6
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.6e-119 433.0 331 71.9
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.5e-119 432.6 415 66.0
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 4.5e-119 432.2 413 66.1
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.0e-118 431.0 400 65.2
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.2e-118 429.9 401 62.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.2e-118 429.9 416 63.5
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.9e-118 429.5 397 65.5
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.8e-118 429.1 331 71.0
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 5.0e-118 428.7 406 64.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.5e-117 426.4 427 60.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.2e-117 426.0 413 65.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 9.4e-117 424.5 400 64.0
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.2e-116 424.1 397 63.5
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.7e-116 422.9 419 62.5
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 3.6e-116 422.5 422 63.0
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.7e-116 422.2 404 66.3
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 6.1e-116 421.8 417 61.2
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 8.0e-116 421.4 422 62.8
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 3.0e-115 419.5 404 66.1
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.5e-114 417.2 402 62.4
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.4e-114 416.0 408 61.3
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 5.7e-114 415.2 421 62.5
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.7e-113 413.7 396 62.6
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.2e-113 413.3 406 64.0
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.4e-112 409.8 403 63.0
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.4e-112 409.8 408 62.5
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 2.7e-111 406.4 428 62.4
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.5e-111 405.6 426 62.4
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.5e-111 405.6 426 62.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.8e-110 402.5 397 65.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 5.0e-110 402.1 328 70.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.5e-110 401.7 401 61.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-109 400.2 401 62.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.9e-109 400.2 365 66.6
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.2e-108 397.5 333 65.2
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 6.1e-108 395.2 326 70.2
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.0e-107 394.4 422 61.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.1e-104 384.4 401 58.1
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 3.1e-104 382.9 422 61.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.2e-103 380.9 432 58.8
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.1e-101 374.4 407 59.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 7.2e-101 371.7 325 66.2
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-99 366.7 405 59.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.6e-98 363.2 396 57.6
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.7e-97 360.5 349 63.3
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 5.6e-93 345.5 339 61.7
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 9.5e-93 344.7 331 64.0
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.8e-92 343.2 410 56.8
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 4.0e-83 312.8 406 51.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-78 298.1 397 51.9
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 7.3e-77 292.0 407 48.6
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 6.2e-76 288.9 407 51.4
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.4e-75 287.7 341 56.6
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.7e-71 273.5 340 51.2
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.0e-70 271.6 377 50.9
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.3e-70 270.4 385 50.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.6e-63 246.1 233 65.2
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.3e-62 244.6 304 53.3
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.1e-59 233.4 323 45.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.8e-52 209.5 227 55.9
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 6.2e-52 209.1 212 59.4
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.7e-49 201.1 243 50.6
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 4.9e-49 199.5 257 52.1
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 4.9e-49 199.5 257 52.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.1e-48 198.4 289 51.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.1e-47 194.1 203 56.7
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.5e-47 193.4 176 58.5
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.8e-44 183.7 276 41.7
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.2e-40 169.9 235 43.8
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.7e-39 167.2 304 37.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.0e-38 165.2 202 48.5
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.5e-37 161.4 327 42.8
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 6.5e-33 146.0 376 36.4
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 7.9e-31 139.0 112 69.6
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.3e-29 133.3 148 60.8
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 7.4e-29 132.5 106 65.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.6e-28 131.3 220 42.7
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.3e-22 110.9 251 31.1
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 4.3e-21 106.7 105 70.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.3e-12 78.6 208 26.4
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 4.5e-10 70.1 118 42.4
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.9e-08 64.7 63 60.3
Cpa.g.sc10.80 Carica papaya HOM05D004552 ORTHO05D005501 8.0e-07 59.3 34 85.3


User provided reference genes

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