Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 0.0e+00 1188.7 692 100.0
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 2.3e-208 729.6 745 66.6
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 2.3e-171 606.7 823 56.6
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 2.2e-166 590.1 734 59.4
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 5.9e-95 352.8 483 52.0
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 7.2e-93 345.9 479 56.8
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 2.1e-92 344.4 484 50.8
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 1.4e-91 341.7 490 49.8
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 3.0e-91 340.5 481 51.1
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 6.7e-91 339.3 473 51.8
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 7.4e-90 335.9 472 51.7
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 1.7e-89 334.7 473 52.4
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 2.8e-89 334.0 479 49.9
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 3.7e-89 333.6 482 48.3
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 1.8e-88 331.3 471 51.0
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 3.1e-88 330.5 497 47.3
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 1.6e-87 328.2 478 50.4
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 1.6e-87 328.2 486 51.0
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 1.0e-86 325.5 474 50.8
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 1.0e-86 325.5 488 50.2
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 1.3e-86 325.1 480 47.9
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 1.3e-86 325.1 520 47.7
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 1.7e-86 324.7 485 50.1
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 2.9e-86 323.9 492 49.4
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 5.0e-86 323.2 475 50.3
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 8.5e-86 322.4 477 50.1
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 1.1e-85 322.0 475 50.7
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 1.1e-85 322.0 479 48.4
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 1.1e-85 322.0 480 50.4
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 1.9e-85 321.2 479 49.1
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 4.2e-85 320.1 486 48.8
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 4.2e-85 320.1 434 54.4
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 5.5e-85 319.7 473 49.7
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 5.5e-85 319.7 474 50.2
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 2.7e-84 317.4 472 49.2
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 2.7e-84 317.4 473 49.3
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 2.7e-84 317.4 470 48.7
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 6.1e-84 316.2 480 51.0
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 8.0e-84 315.8 479 49.7
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 6.7e-83 312.8 434 50.9
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 6.7e-83 312.8 484 51.0
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 1.2e-82 312.0 471 52.0
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 1.2e-82 312.0 479 49.1
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 2.0e-82 311.2 482 50.4
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 3.3e-82 310.5 474 47.9
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 7.5e-82 309.3 480 49.2
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 9.7e-82 308.9 484 48.1
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 1.7e-81 308.1 482 47.3
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 3.7e-81 307.0 493 46.9
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 3.7e-81 307.0 487 48.7
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 3.7e-81 307.0 484 43.8
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 8.2e-81 305.8 477 48.8
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 4.1e-80 303.5 497 46.3
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 4.1e-80 303.5 473 46.1
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 9.1e-80 302.4 485 49.3
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 4.5e-79 300.1 471 48.4
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 7.7e-79 299.3 475 51.8
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 1.3e-78 298.5 476 47.1
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 5.0e-78 296.6 478 49.2
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 1.5e-77 295.0 472 48.1
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.5e-77 295.0 457 42.0
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 2.5e-77 294.3 481 48.6
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 5.5e-77 293.1 477 45.9
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 1.2e-76 292.0 480 45.0
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 1.6e-76 291.6 477 45.7
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 3.6e-76 290.4 489 47.2
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 1.4e-75 288.5 481 48.0
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 3.0e-75 287.3 476 47.3
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.8e-73 280.0 481 46.4
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 1.8e-72 278.1 478 47.3
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 2.4e-72 277.7 499 40.9
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 7.0e-72 276.2 474 47.7
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 9.1e-72 275.8 478 46.2
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.2e-71 275.4 494 45.5
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 1.3e-70 271.9 476 46.6
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 2.1e-68 264.6 481 43.9
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 4.0e-67 260.4 480 43.5
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 6.8e-67 259.6 474 43.7
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 2.6e-66 257.7 470 43.2
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 2.6e-66 257.7 432 46.5
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 2.6e-66 257.7 482 44.4
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 3.4e-66 257.3 470 43.4
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 1.7e-65 255.0 475 45.1
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 3.7e-65 253.8 475 44.8
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 8.3e-65 252.7 474 43.5
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 1.6e-63 248.4 479 43.0
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 7.8e-63 246.1 463 42.5
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 2.9e-62 244.2 465 44.3
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 6.6e-62 243.0 449 45.4
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 1.6e-60 238.4 463 42.8
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 4.7e-60 236.9 463 43.2
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 1.8e-59 235.0 477 44.0
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 1.1e-53 215.7 560 37.1
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 1.1e-53 215.7 560 37.1
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 1.2e-50 205.7 398 42.0
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 5.8e-50 203.4 199 56.8
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 1.7e-49 201.8 562 37.0
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 1.9e-45 188.3 237 48.5
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 2.3e-38 164.9 203 50.7
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 8.9e-35 152.9 370 40.8
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 2.0e-34 151.8 202 45.5
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 5.8e-34 150.2 169 49.7
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 5.6e-29 133.7 154 50.0
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 4.7e-28 130.6 219 41.1
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 5.8e-26 123.6 70 90.0
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 2.4e-24 118.2 68 88.2
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 7.8e-23 113.2 68 92.6
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 1.5e-21 109.0 67 82.1
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 2.8e-20 104.8 152 43.4
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 2.4e-19 101.7 130 46.9
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 2.4e-19 101.7 130 46.2
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 1.2e-18 99.4 271 29.5
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 9.3e-16 89.7 66 65.2
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 2.6e-10 71.6 54 61.1
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 4.5e-10 70.9 82 48.8
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.3e-09 69.3 128 40.6
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 2.2e-09 68.6 50 72.0
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 1.0e-06 59.7 90 43.3


User provided reference genes

Program Settings