Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.1e-139 498.4 244 100.0
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.6e-122 440.7 243 90.1
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.7e-118 429.5 245 87.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.8e-114 414.5 245 84.1
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 5.1e-110 401.4 243 82.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.8e-73 278.9 244 57.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.3e-69 265.8 243 54.3
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 4.8e-68 261.9 243 52.3
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.4e-67 259.6 243 55.1
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 5.9e-66 255.0 244 53.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.2e-64 249.2 246 54.5
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.2e-64 248.8 240 54.6
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 9.4e-64 247.7 246 53.7
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.7e-63 246.1 239 51.0
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.4e-62 243.8 232 53.4
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.8e-62 243.4 246 51.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 6.7e-62 241.5 244 50.8
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.8e-62 241.1 244 51.6
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.0e-61 240.0 236 52.1
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 2.0e-61 240.0 243 51.9
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 3.3e-61 239.2 243 49.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 4.4e-61 238.8 245 52.7
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.7e-60 236.9 243 51.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.8e-60 236.1 245 49.8
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 4.8e-60 235.3 242 51.2
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.1e-59 234.2 244 50.4
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.4e-59 233.8 246 50.0
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.8e-59 233.4 241 49.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.4e-59 233.0 244 49.2
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-59 232.3 244 48.8
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 7.0e-59 231.5 245 50.2
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.2e-58 230.7 134 85.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.0e-58 229.9 232 50.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.6e-58 229.6 219 53.4
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.5e-58 229.2 244 47.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 4.5e-58 228.8 245 48.2
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 4.5e-58 228.8 243 50.6
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 5.9e-58 228.4 245 49.0
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 5.9e-58 228.4 238 49.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.9e-58 228.4 240 50.8
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 7.7e-58 228.0 246 50.8
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.3e-57 227.3 245 49.4
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-57 227.3 244 48.8
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.3e-57 227.3 230 50.9
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.2e-57 226.5 244 48.4
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.9e-57 226.1 244 49.2
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-57 225.7 244 48.0
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 5.0e-57 225.3 244 48.0
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 5.0e-57 225.3 242 48.3
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 6.5e-57 224.9 244 48.8
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 8.5e-57 224.6 238 49.2
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 8.5e-57 224.6 242 47.9
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.1e-56 224.2 230 49.6
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 3.2e-56 222.6 243 46.5
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 5.5e-56 221.9 230 47.8
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 5.5e-56 221.9 246 46.7
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 5.5e-56 221.9 246 47.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 9.4e-56 221.1 244 47.5
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.2e-55 220.7 243 49.4
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.6e-55 220.3 246 48.0
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.7e-55 218.8 236 48.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.7e-55 218.8 243 46.5
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.0e-54 217.6 246 47.6
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 5.2e-54 215.3 266 45.9
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 8.8e-54 214.5 243 46.5
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 8.8e-54 214.5 229 48.0
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.0e-53 213.4 246 48.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.6e-53 213.0 246 47.6
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.6e-53 213.0 266 45.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.6e-53 213.0 233 47.6
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 2.2e-52 209.9 247 44.5
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.8e-52 208.8 224 47.3
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 6.3e-52 208.4 244 45.1
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 8.2e-52 208.0 232 46.6
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.1e-51 207.6 240 45.8
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 4.1e-51 205.7 224 46.9
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 7.0e-51 204.9 224 46.9
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.1e-51 204.5 243 46.1
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-50 204.1 222 47.3
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.2e-49 199.9 219 47.9
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.8e-49 199.1 177 54.2
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 5.0e-49 198.7 188 52.1
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-48 196.8 244 48.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.5e-48 196.4 237 42.6
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.5e-48 196.4 204 47.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.5e-48 195.3 229 45.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 7.2e-48 194.9 223 41.7
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.1e-47 193.4 200 48.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.1e-47 193.4 244 44.3
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 2.7e-47 193.0 203 45.8
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 3.6e-47 192.6 267 41.6
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 3.6e-47 192.6 238 41.6
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 4.7e-47 192.2 235 42.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.7e-47 192.2 229 44.5
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.1e-47 191.8 188 50.5
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 8.0e-47 191.4 203 46.8
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.0e-46 191.0 229 43.7
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.0e-46 191.0 163 57.1
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.3e-46 189.9 230 43.0
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.3e-46 189.9 251 43.8
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.0e-46 189.5 235 41.7
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.8e-46 188.3 235 41.7
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 8.8e-46 188.0 233 43.3
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.2e-45 187.6 187 49.2
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.4e-45 186.0 250 42.4
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.3e-44 184.1 222 43.7
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.3e-44 184.1 235 42.6
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.7e-44 183.7 260 44.2
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 2.8e-44 183.0 233 42.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.7e-44 182.6 233 43.8
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.7e-44 182.6 233 43.8
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.7e-44 182.6 233 43.8
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 3.7e-44 182.6 267 39.0
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 4.8e-44 182.2 283 37.8
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 6.3e-44 181.8 246 39.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-43 181.0 167 53.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.1e-43 181.0 237 41.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 9.1e-43 177.9 256 40.2
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-42 176.0 248 42.7
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.5e-42 175.6 223 39.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 7.7e-42 174.9 234 43.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.3e-41 174.1 215 39.5
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.3e-41 173.3 291 37.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.3e-41 173.3 235 39.1
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 3.8e-41 172.6 249 38.2
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.8e-41 172.6 191 45.0
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.1e-40 171.0 235 40.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.1e-40 171.0 235 40.4
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-40 170.2 235 41.3
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.9e-40 170.2 235 41.3
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.9e-40 170.2 156 53.8
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 5.5e-40 168.7 245 43.7
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.8e-39 166.4 179 45.3
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.8e-39 166.4 152 54.6
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 8.0e-39 164.9 229 40.2
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 3.0e-38 162.9 215 45.1
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 8.9e-38 161.4 235 37.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 2.0e-37 160.2 246 40.2
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.6e-37 159.8 235 40.0
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 7.5e-37 158.3 179 44.1
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-36 157.5 198 37.4
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.7e-36 157.1 234 40.2
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 8.3e-36 154.8 179 42.5
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.4e-35 154.1 155 47.7
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-35 153.7 191 46.1
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.6e-34 150.6 244 36.5
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.3e-33 147.5 157 45.2
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 6.6e-33 145.2 264 38.6
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 7.3e-32 141.7 288 33.3
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.1e-30 136.3 223 36.3
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.6e-29 133.3 156 42.9
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.4e-29 132.9 233 34.8
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.4e-29 132.9 243 35.0
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 7.5e-29 131.7 120 55.8
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 5.4e-27 125.6 197 43.1
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 4.6e-26 122.5 201 33.3
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.1e-24 117.9 64 89.1
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 7.3e-24 115.2 279 27.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 9.5e-24 114.8 217 33.6
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 3.6e-23 112.8 137 44.5
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.8e-22 110.5 295 25.8
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.3e-22 110.2 128 46.1
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 2.6e-21 106.7 225 31.1
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 4.9e-20 102.4 135 37.0
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.1e-19 101.3 74 60.8
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.7e-18 96.7 187 36.4
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.5e-16 90.9 217 28.1
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.3e-16 89.7 88 55.7
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 9.5e-16 88.2 143 39.9
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.1e-14 84.7 88 50.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.3e-14 83.6 77 51.9
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.5e-13 80.9 132 37.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.5e-13 78.6 80 51.2
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-12 77.0 169 32.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.5e-10 69.7 58 51.7
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 7.8e-10 68.6 62 46.8
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 1.0e-09 68.2 41 70.7
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.7e-09 67.4 73 49.3
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 2.3e-09 67.0 138 32.6
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 6.2e-07 58.9 137 29.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.4e-06 57.8 141 25.5
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 5.2e-06 55.8 128 27.3


User provided reference genes

Program Settings