Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.5e-78 296.2 156 100.0
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.5e-78 296.2 156 100.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 8.4e-74 280.4 167 86.8
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.4e-73 278.9 167 86.8
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 3.1e-68 261.9 169 87.0
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 9.9e-59 230.3 182 70.3
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.3e-58 229.9 174 73.6
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 4.9e-58 228.0 183 69.9
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.3e-55 219.9 162 74.1
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 3.3e-54 215.3 158 72.8
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.6e-54 214.5 156 74.4
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.3e-53 213.4 171 71.3
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.6e-53 213.0 158 71.5
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-53 212.6 177 68.9
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.8e-53 212.2 170 70.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.1e-52 210.3 158 72.2
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.8e-52 209.5 159 69.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 3.1e-52 208.8 158 70.9
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 5.3e-52 208.0 154 70.1
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.9e-52 207.6 171 70.2
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.2e-51 206.8 172 69.2
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.5e-51 206.5 147 72.1
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.6e-51 205.7 173 69.9
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.6e-51 205.7 154 69.5
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.6e-51 205.7 173 70.5
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 5.8e-51 204.5 167 70.7
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.8e-51 204.5 158 71.5
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 7.6e-51 204.1 172 66.9
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 9.9e-51 203.8 151 76.2
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 9.9e-51 203.8 128 78.9
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 3.8e-50 201.8 142 73.2
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 1.4e-49 199.9 158 72.8
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.4e-49 199.1 160 70.6
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 3.2e-49 198.7 152 73.0
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 9.3e-49 197.2 148 70.9
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.6e-48 196.4 134 74.6
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 2.1e-48 196.1 158 71.5
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 6.0e-48 194.5 127 77.2
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 7.9e-48 194.1 158 67.7
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.0e-47 193.7 155 72.9
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.3e-47 193.4 135 74.1
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.3e-47 192.6 128 75.0
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 5.1e-47 191.4 155 66.5
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.1e-47 191.4 204 57.4
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 6.7e-47 191.0 158 65.8
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.9e-46 189.5 127 76.4
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.5e-46 189.1 161 66.5
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.3e-46 188.7 150 68.7
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.3e-46 188.7 159 65.4
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.3e-46 188.3 152 72.4
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 7.4e-46 187.6 126 77.8
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 9.6e-46 187.2 107 84.1
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.3e-45 186.8 151 68.2
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.3e-45 186.8 105 85.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.3e-45 186.8 147 73.5
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.6e-45 186.4 125 76.8
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.1e-45 186.0 147 72.1
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 2.8e-45 185.7 158 65.8
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.8e-45 185.7 147 72.8
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.8e-45 185.7 159 66.0
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 6.2e-45 184.5 107 85.0
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 6.2e-45 184.5 147 72.8
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 8.2e-45 184.1 146 67.1
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 8.2e-45 184.1 146 68.5
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.1e-44 183.7 151 66.2
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.8e-44 183.0 153 64.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.4e-44 182.6 153 63.4
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.4e-44 182.6 107 84.1
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 2.4e-44 182.6 157 66.9
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.4e-44 182.6 149 66.4
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 3.1e-44 182.2 153 64.1
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 3.1e-44 182.2 153 64.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 3.1e-44 182.2 159 63.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.1e-44 182.2 155 64.5
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 4.0e-44 181.8 153 66.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.0e-44 181.8 146 67.1
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 6.9e-44 181.0 126 73.0
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 6.9e-44 181.0 147 70.7
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 9.0e-44 180.6 108 83.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 9.0e-44 180.6 126 69.8
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.2e-43 180.3 157 67.5
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-43 179.9 153 62.7
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 1.5e-43 179.9 143 67.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.5e-43 179.9 108 83.3
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 2.6e-43 179.1 147 68.0
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 4.5e-43 178.3 113 77.9
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.5e-43 178.3 159 64.8
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 4.5e-43 178.3 147 70.1
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 5.8e-43 177.9 153 62.1
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 5.8e-43 177.9 153 62.7
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 7.6e-43 177.6 158 62.7
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.6e-43 177.6 158 62.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 7.6e-43 177.6 105 83.8
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.3e-42 176.8 126 69.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.7e-42 176.4 147 66.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.7e-42 176.4 153 62.7
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.7e-42 176.4 146 67.1
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.7e-42 176.4 146 67.1
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 1.7e-42 176.4 146 67.1
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 2.2e-42 176.0 106 76.4
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.9e-42 175.6 149 65.1
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 6.5e-42 174.5 149 69.1
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.5e-42 174.5 158 62.0
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 6.5e-42 174.5 162 66.0
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.5e-42 174.5 103 82.5
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.4e-41 173.3 152 69.7
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.4e-41 173.3 165 66.7
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.9e-41 172.9 150 64.7
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 2.5e-41 172.6 149 68.5
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 3.2e-41 172.2 153 61.4
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 5.5e-41 171.4 124 71.0
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 7.1e-41 171.0 153 60.8
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-40 170.2 152 61.8
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-40 169.9 104 77.9
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.6e-40 169.9 106 76.4
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.6e-40 169.9 119 73.1
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.1e-40 169.5 158 62.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 3.5e-40 168.7 208 54.8
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 6.0e-40 167.9 123 72.4
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.0e-40 167.9 158 61.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.0e-39 165.6 118 72.0
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 3.9e-39 165.2 152 61.8
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 6.7e-39 164.5 127 66.9
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 6.7e-39 164.5 102 75.5
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 6.7e-39 164.5 102 75.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.1e-38 163.7 116 74.1
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 2.5e-38 162.5 164 56.1
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 5.7e-38 161.4 148 59.5
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.2e-37 159.5 144 60.4
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 3.1e-36 155.6 101 75.2
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.3e-34 150.2 119 64.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 3.8e-34 148.7 107 70.1
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-33 147.1 106 68.9
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.9e-33 146.4 167 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.5e-33 144.8 143 57.3
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.6e-32 143.3 107 70.1
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.6e-32 141.7 191 49.2
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.0e-31 140.6 130 58.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.0e-31 140.6 116 64.7
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.9e-31 138.7 158 53.2
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 1.1e-30 137.1 127 59.8
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.5e-30 136.0 76 88.2
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.7e-30 134.0 158 52.5
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.7e-30 134.0 158 52.5
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.2e-29 131.0 158 51.9
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.1e-28 130.6 137 53.3
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.6e-27 125.9 104 60.6
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 2.6e-27 125.9 132 56.1
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 5.9e-27 124.8 116 56.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 5.1e-23 111.7 58 89.7
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.3e-21 107.1 74 77.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.2e-19 100.5 58 84.5
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 5.9e-19 98.2 75 62.7
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 5.0e-18 95.1 75 61.3
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 6.5e-18 94.7 75 61.3
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.3e-15 86.3 113 56.6
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 2.6e-14 82.8 47 80.9
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 4.4e-14 82.0 101 41.6
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 3.7e-13 79.0 70 61.4
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.4e-12 77.0 91 51.6
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.4e-12 77.0 59 66.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 4.2e-09 65.5 113 36.3
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.2e-09 65.5 40 72.5
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 3.0e-07 59.3 58 53.4


User provided reference genes

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