Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 2.1e-171 605.5 294 100.0
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 7.6e-161 570.5 327 87.2
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 4.9e-160 567.8 327 86.9
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 1.8e-154 549.3 327 82.9
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 8.2e-131 470.7 326 72.1
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 7.0e-130 467.6 327 70.9
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 9.1e-130 467.2 327 70.9
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.6e-129 466.5 327 70.3
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 3.5e-129 465.3 327 70.3
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 4.5e-129 464.9 331 69.5
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 5.9e-129 464.5 330 70.6
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 2.9e-128 462.2 327 69.4
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 6.5e-128 461.1 328 70.4
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 5.5e-127 458.0 327 71.3
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 9.4e-127 457.2 328 70.7
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 1.6e-126 456.4 329 70.8
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 2.1e-126 456.1 327 70.0
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 3.6e-126 455.3 327 69.1
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 6.1e-126 454.5 327 70.3
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 1.0e-125 453.8 328 70.4
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 1.4e-125 453.4 328 70.1
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 3.0e-125 452.2 328 68.6
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 8.8e-125 450.7 327 69.1
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 1.7e-123 446.4 327 69.7
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 8.2e-123 444.1 329 69.3
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 1.4e-122 443.4 357 63.9
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 1.4e-122 443.4 318 69.8
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 1.4e-122 443.4 321 70.7
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 1.4e-122 443.4 328 68.6
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 2.4e-122 442.6 329 69.9
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 3.1e-122 442.2 323 70.9
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 5.3e-122 441.4 328 67.4
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 5.3e-122 441.4 323 69.3
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 7.0e-122 441.0 327 69.1
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.2e-121 440.3 328 68.6
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 2.0e-121 439.5 328 68.6
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 2.7e-121 439.1 328 70.4
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 3.5e-121 438.7 326 69.0
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 3.5e-121 438.7 310 71.0
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 7.7e-121 437.6 328 70.1
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.0e-120 437.2 328 68.6
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 1.0e-120 437.2 310 71.0
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.3e-120 436.8 329 67.2
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 1.3e-120 436.8 327 67.9
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 1.7e-120 436.4 326 68.4
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 3.8e-120 435.3 327 69.4
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 5.0e-120 434.9 324 67.0
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 6.5e-120 434.5 323 68.1
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 8.5e-120 434.1 323 68.1
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 8.5e-120 434.1 309 71.5
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 1.9e-119 433.0 329 67.2
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 3.2e-119 432.2 328 68.3
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 1.0e-117 427.2 329 67.8
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 1.8e-117 426.4 329 67.8
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.2e-116 423.7 322 67.4
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 2.0e-116 422.9 340 64.1
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 4.4e-116 421.8 339 63.4
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 9.8e-116 420.6 332 65.1
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 1.3e-115 420.2 327 65.4
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 2.2e-115 419.5 328 65.9
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 3.7e-115 418.7 331 64.4
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 3.7e-115 418.7 331 64.4
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 8.3e-115 417.5 329 65.0
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.1e-114 417.2 319 64.9
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 1.4e-114 416.8 330 64.2
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 1.4e-114 416.8 330 64.2
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 1.4e-114 416.8 292 70.5
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 1.8e-114 416.4 326 65.3
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 2.4e-114 416.0 326 65.3
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 4.1e-114 415.2 326 65.0
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 5.4e-114 414.8 328 64.9
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 7.0e-114 414.5 329 65.0
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 7.0e-114 414.5 326 65.6
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 9.1e-114 414.1 326 65.0
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 1.2e-113 413.7 329 64.4
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 1.2e-113 413.7 331 65.9
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 1.2e-113 413.7 328 65.5
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 1.6e-113 413.3 321 65.4
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 2.0e-113 412.9 330 64.2
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 2.0e-113 412.9 329 64.4
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.7e-113 412.5 299 68.9
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 2.7e-113 412.5 299 68.9
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 2.7e-113 412.5 299 68.9
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 2.7e-113 412.5 299 68.6
VMungo1215G1221 Vigna mungo HOM05D003894 ORTHO05D004584 2.7e-113 412.5 336 63.1
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 3.5e-113 412.1 329 62.3
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 3.5e-113 412.1 394 55.3
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 3.5e-113 412.1 328 62.2
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 5.9e-113 411.4 331 63.7
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 5.9e-113 411.4 322 66.5
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 5.9e-113 411.4 332 63.9
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 7.7e-113 411.0 327 64.5
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 1.7e-112 409.8 286 70.3
Phvul.002G057400 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 1.7e-112 409.8 337 63.2
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 2.2e-112 409.5 329 63.5
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 2.2e-112 409.5 299 68.6
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 2.2e-112 409.5 311 65.6
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 2.2e-112 409.5 326 66.0
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 2.2e-112 409.5 328 62.8
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 2.9e-112 409.1 331 62.2
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 3.8e-112 408.7 340 63.8
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 5.0e-112 408.3 329 63.5
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 1.1e-111 407.1 329 64.4
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 1.5e-111 406.8 328 63.7
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.5e-111 406.8 343 60.9
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 1.9e-111 406.4 324 64.5
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 4.2e-111 405.2 325 64.0
CAN.G62.34 Capsicum annuum HOM05D003894 ORTHO05D004584 1.2e-110 403.7 316 65.2
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 2.1e-110 402.9 351 61.5
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 6.1e-110 401.4 291 67.7
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 3.0e-109 399.1 330 62.4
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 3.4e-108 395.6 325 61.5
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 4.4e-108 395.2 329 64.4
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 2.2e-107 392.9 347 60.2
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 5.9e-105 384.8 308 64.0
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 5.9e-105 384.8 290 65.9
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 1.6e-102 376.7 285 66.3
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 2.1e-102 376.3 278 66.9
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 4.0e-101 372.1 326 57.4
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 5.7e-100 368.2 317 61.8
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 1.8e-98 363.2 280 64.6
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 1.2e-97 360.5 277 66.1
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 2.0e-97 359.8 280 64.6
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 2.6e-92 342.8 325 55.1
Gohir.A08G169100 Gossypium hirsutum HOM05D003894 ORTHO05D004584 6.4e-91 338.2 216 75.9
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 6.4e-91 338.2 289 57.4
Gohir.D08G187500 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.4e-90 336.3 216 75.5
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 5.4e-90 335.1 304 54.6
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 2.0e-89 333.2 282 60.6
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 2.0e-89 333.2 240 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 3.3e-87 325.9 280 58.6
Sc22g0000940 Simmondsia chinensis HOM05D003894 ORTHO05D004584 1.6e-86 323.6 217 72.8
AUR62007102 Chenopodium quinoa HOM05D003894 ORTHO05D004584 3.6e-86 322.4 243 67.5
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 3.4e-84 315.8 244 66.8
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 4.4e-84 315.5 240 65.4
AUR62019965 Chenopodium quinoa HOM05D003894 ORTHO05D004584 6.4e-83 311.6 239 66.5
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 6.4e-83 311.6 313 54.0
PGSC0003DMG401004821 Solanum tuberosum HOM05D003894 ORTHO05D004584 6.4e-83 311.6 238 63.4
Lsat_1_v5_gn_7_43960 Lactuca sativa HOM05D003894 ORTHO05D004584 7.8e-81 304.7 249 63.1
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 7.8e-81 304.7 226 69.0
Gohir.D03G163400 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.3e-80 303.9 215 69.3
Lsat_1_v5_gn_0_29701 Lactuca sativa HOM05D003894 ORTHO05D004584 1.3e-80 303.9 193 77.2
Lsat_1_v5_gn_7_52220 Lactuca sativa HOM05D003894 ORTHO05D004584 2.6e-76 289.7 229 65.9
Lsat_1_v5_gn_8_116920 Lactuca sativa HOM05D003894 ORTHO05D004584 2.6e-76 289.7 229 65.9
Peaxi162Scf00209g00012 Petunia axillaris HOM05D003894 ORTHO05D004584 3.4e-76 289.3 243 60.1
Lsat_1_v5_gn_4_3501 Lactuca sativa HOM05D003894 ORTHO05D004584 7.6e-76 288.1 229 65.5
Lsat_1_v5_gn_6_98401 Lactuca sativa HOM05D003894 ORTHO05D004584 2.2e-75 286.6 228 65.4
Lsat_1_v5_gn_3_140581 Lactuca sativa HOM05D003894 ORTHO05D004584 4.9e-75 285.4 226 65.5
Lsat_1_v5_gn_6_107601 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-74 284.3 221 66.1
Lsat_1_v5_gn_1_54820 Lactuca sativa HOM05D003894 ORTHO05D004584 7.8e-73 278.1 235 61.7
Lsat_1_v5_gn_8_19200 Lactuca sativa HOM05D003894 ORTHO05D004584 7.8e-73 278.1 235 61.7
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 2.4e-69 266.5 225 60.4
Haze_07898 Corylus avellana HOM05D003894 ORTHO05D004584 4.9e-67 258.8 190 70.0
Glyma.11G034300 Glycine max HOM05D003894 ORTHO05D004584 4.9e-67 258.8 212 65.1
CDE04G1229 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 4.6e-65 252.3 169 68.0
Lsat_1_v5_gn_1_122420 Lactuca sativa HOM05D003894 ORTHO05D004584 4.6e-65 252.3 160 76.2
Lj8A264T58 Lonicera japonica HOM05D003894 ORTHO05D004584 1.8e-61 240.4 192 63.0
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.2e-52 211.1 287 39.0
CBR_g37463 Chara braunii HOM05D003894 ORTHO05D004584 1.8e-37 160.6 446 29.6
Lsat_1_v5_gn_2_53921 Lactuca sativa HOM05D003894 ORTHO05D004584 1.5e-36 157.5 193 48.7
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 6.7e-32 142.1 286 32.2
Nitab4.5_0000322g0220 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.5e-28 131.0 175 44.6
Haze_07897 Corylus avellana HOM05D003894 ORTHO05D004584 3.8e-27 126.3 87 69.0
Cfa012736 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.4e-26 124.4 87 67.8
Oeu024051.1 Olea europaea HOM05D003894 ORTHO05D004584 6.7e-24 115.5 87 69.0
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 6.7e-24 115.5 302 30.5
Cc04_g06480 Coffea canephora HOM05D003894 ORTHO05D004584 1.1e-23 114.8 212 39.2
CDE04G2654 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 9.7e-23 111.7 67 82.1
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.7e-22 110.9 288 29.9
HPP92_025623 Vanilla planifolia HOM05D003894 ORTHO05D004584 6.3e-22 109.0 68 73.5
Cc00_g07750 Coffea canephora HOM05D003894 ORTHO05D004584 1.1e-18 98.2 66 71.2
Glyma.11G034200 Glycine max HOM05D003894 ORTHO05D004584 1.6e-17 94.4 83 60.2
Actinidia02143 Actinidia chinensis HOM05D003894 ORTHO05D004584 2.1e-17 94.0 54 79.6
BcaB08g36006 Brassica carinata HOM05D003894 ORTHO05D004584 3.6e-17 93.2 64 62.5
Oeu054071.1 Olea europaea HOM05D003894 ORTHO05D004584 6.7e-16 89.0 50 82.0
C08p23210 Brassica napus HOM05D003894 ORTHO05D004584 5.5e-10 69.3 46 71.7
TWI38G2300 Tripterygium wilfordii HOM05D000462 ORTHO05D001280 2.6e-07 60.5 38 73.7
BcaNung02627 Brassica carinata HOM05D003894 ORTHO05D032733 5.7e-07 59.3 32 84.4
C07p30760 Brassica napus HOM05D001187 ORTHO05D000993 5.7e-07 59.3 33 84.8
BolC7t43619H Brassica oleracea HOM05D001187 ORTHO05D000993 5.7e-07 59.3 33 84.8
BolC7t44969H Brassica oleracea HOM05D003894 ORTHO05D032733 5.7e-07 59.3 32 84.4
C07p44500 Brassica napus HOM05D003894 ORTHO05D032733 1.3e-06 58.2 31 87.1


User provided reference genes

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