Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 2261.1 1147 100.0
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1798.9 1112 84.4
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1781.1 1111 83.6
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1638.6 1065 80.9
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1305.8 1066 65.7
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1298.1 1070 64.5
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1296.6 1067 65.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1288.9 1072 64.8
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1287.3 1068 64.3
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1285.4 1065 63.7
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1272.3 1066 63.2
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 1272.3 1070 63.5
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 1268.4 1068 63.6
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1262.3 1075 62.3
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1259.6 1068 63.5
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1250.3 1072 62.9
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 1238.4 1081 62.7
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1223.8 1281 54.6
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1223.0 1065 61.2
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1219.5 1065 61.1
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1216.4 1067 61.9
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1194.5 1050 62.1
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1179.1 1067 60.1
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1177.5 1068 59.9
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1176.8 1067 60.0
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1176.4 1069 60.1
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1173.7 1051 60.3
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1170.6 1049 60.3
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1163.3 1067 59.6
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1159.8 1065 59.7
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1156.0 1072 59.6
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1149.8 1067 58.6
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1147.9 1072 59.1
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1147.5 1070 57.8
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1146.7 1061 58.9
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1142.1 1044 59.4
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1132.5 1072 57.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1131.7 1077 59.2
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1130.9 1068 58.9
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1130.2 1068 58.7
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1129.8 1066 58.6
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1127.5 1069 58.4
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1126.3 1065 57.1
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1125.2 1073 58.3
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1124.4 1073 58.3
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1122.5 1075 57.8
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1122.5 1072 56.7
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1122.1 1071 57.9
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1121.7 1064 56.9
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1120.5 1070 57.6
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1117.1 1073 58.1
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1115.5 1057 58.7
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1113.6 1109 55.2
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1113.2 1106 55.7
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1108.6 1045 57.3
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1099.3 1074 58.3
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1099.3 1066 55.0
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1099.0 1062 56.6
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1097.4 1068 56.2
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1095.9 1068 55.9
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1090.1 1016 58.4
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 2.8e-307 1058.9 1066 56.1
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 3.3e-300 1035.4 1055 54.7
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 4.3e-300 1035.0 1071 55.4
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 5.6e-300 1034.6 1112 53.4
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 2.1e-299 1032.7 1081 53.8
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 2.8e-299 1032.3 1069 54.9
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 6.6e-293 1011.1 968 58.2
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 8.6e-293 1010.7 1052 54.1
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.2e-289 1000.3 930 57.2
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 2.9e-288 995.7 1059 53.4
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.2e-287 992.3 882 61.3
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 3.5e-286 988.8 1067 51.2
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.8e-272 942.2 1012 53.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.6e-265 919.5 794 61.3
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 3.1e-258 896.0 1089 48.5
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 5.3e-258 895.2 910 52.6
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 1.5e-249 867.1 807 59.2
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 3.2e-247 859.4 933 52.8
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 1.1e-236 824.3 877 53.6
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 6.1e-222 775.4 754 56.8
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 7.2e-207 725.3 517 72.9
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 4.8e-203 712.6 756 56.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 1.6e-190 671.0 1108 38.7
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 2.7e-177 627.1 659 54.0
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 1.2e-169 601.7 641 53.4
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.1e-161 574.3 665 50.1
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 7.3e-159 565.8 1064 37.2
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.7e-155 554.7 619 50.9
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.4e-149 535.0 405 67.2
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 6.9e-149 532.7 408 66.7
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 3.9e-136 490.3 400 64.8
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 4.3e-135 486.9 477 56.8
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.3e-134 485.3 431 63.1
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 8.2e-134 482.6 410 63.2
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 9.0e-125 452.6 311 74.9
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 9.0e-125 452.6 653 44.9
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.5e-124 451.8 613 46.5
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 7.2e-122 443.0 338 67.8
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.8e-102 377.1 281 70.1
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.9e-91 341.3 308 59.4
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.7e-78 298.9 178 83.7
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 4.3e-74 284.3 386 42.7
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 9.5e-74 283.1 178 77.5
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 8.0e-73 280.0 214 64.5
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.3e-70 272.7 347 48.7
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.7e-70 272.3 557 32.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 3.1e-56 224.9 177 61.0
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 3.2e-53 214.9 333 41.1
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.5e-52 211.5 232 53.9
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 6.0e-52 210.7 267 48.3
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 5.1e-51 207.6 369 37.4
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 6.6e-51 207.2 740 26.1
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.3e-50 204.9 684 27.0
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.8e-48 199.1 107 88.8
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 7.6e-47 193.7 111 85.6
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 7.1e-45 187.2 126 73.0
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.0e-40 171.4 316 37.3
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 4.4e-39 167.9 124 66.9
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 9.9e-39 166.8 399 32.8
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.6e-34 151.0 154 56.5
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 9.0e-32 143.7 153 45.8
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 2.3e-27 129.0 215 36.3
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 8.7e-27 127.1 148 48.6
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.6e-23 114.0 129 49.6
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.7e-22 112.8 82 65.9
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 4.9e-22 111.3 82 65.9
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.1e-21 110.2 82 64.6
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 4.6e-20 104.8 72 73.6
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 6.0e-20 104.4 52 96.2
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 7.9e-20 104.0 72 72.2
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.9e-19 101.7 74 68.9
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.1e-19 101.3 125 48.0
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.5e-18 99.0 207 37.2
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 7.4e-18 97.4 83 56.6
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.1e-17 95.9 134 44.8
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 4.6e-12 78.2 181 33.1
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.8e-11 76.3 173 33.5
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.8e-11 76.3 67 55.2
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 4.8e-09 68.2 67 50.7
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 6.3e-09 67.8 63 52.4
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 2.4e-08 65.9 149 26.8
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 3.4e-07 62.0 57 57.9
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 4.5e-07 61.6 56 58.9
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 5.9e-07 61.2 85 45.9


User provided reference genes

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